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Eleven atoms from the example shown in Figure 1 where there are 5 wholes (each a KEGG pathway). The atom entry gives the unique row of the incidence matrix I associated with the involved genes. For example, there are 4 genes involved in both Glycolysis/Gluconeogenesis and Fructose and mannose metabolism (the first and last pathways) and not involved in the other three.
| atom | # genes | atom | # genes |
|---|---|---|---|
| 00011 | 1 | 10100 | 3 |
| 00110 | 1 | 01000 | 25 |
| 10101 | 8 | 00001 | 20 |
| 11000 | 7 | 00100 | 14 |
| 00010 | 23 | 10000 | 40 |
| 10001 | 4 |
