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. Author manuscript; available in PMC: 2012 May 15.
Published in final edited form as: Stat Appl Genet Mol Biol. 2012 Jan 6;11(2):10.2202/1544-6115.1716 /j/sagmb.2012.11.issue-2/1544-6115.1716/1544-6115.1716.xml. doi: 10.2202/1544-6115.1716

Table 3.

Ablating annotations in KEGG. We start with the 5052 genes annotated to 219 KEGG pathways containing no more than 500 genes. The category-defining incidence matrix is ablated as in (11), and properties of the undirected function profile graph are obtained. The right-most column shows the size of the largest clique in a triangulated version of the undirected function profile graph.

ρ # atoms genes per atom max D mean D max clique
1 1093 4.6 214 34.3 436
1/2 735 6.9 110 20.4 249
1/4 395 12.8 41 7.8 59
1/8 260 19.4 24 2.9 13
1/16 220 23.0 8 1.3 5