Table 3.
The enriched pathways in common carp identified by KOBAS (corrected p-value < 0.05)
| KEGG pathway | ID | Common carp contigs proportion | Zebrafish gene proportion | Biological process GO term (level 2)* |
|---|---|---|---|---|
| Protein digestion and absorption | ko04974 | 547/10308 | 126/7433 | multicellular organismal process |
| Glycolysis/Gluconeogenesis | ko00010 | 358/10308 | 76/7433 | metabolic process |
| Pancreatic secretion | ko04972 | 564/10308 | 172/7433 | Localization |
| Complement and coagulation cascades | ko04610 | 360/10308 | 105/7433 | immune system process |
| Starch and sucrose metabolism | ko00500 | 243/10308 | 56/7433 | metabolic process |
| Oxidative phosphorylation | ko00190 | 415/10308 | 139/7433 | metabolic process |
| Antigen processing and presentation | ko04612 | 278/10308 | 85/7433 | immune system process |
| Pyruvate metabolism | ko00620 | 175/10308 | 47/7433 | metabolic process |
| TCA cycle | ko00020 | 149/10308 | 36/7433 | metabolic process |
| Pentose phosphate pathway | ko00030 | 134/10308 | 31/7433 | cellular process |
| RNA transport | ko03013 | 352/10308 | 162/7433 | Localization |
| Mineral absorption | ko04978 | 134/10308 | 43/7433 | developmental process |
| PPAR signaling pathway | ko03320 | 232/10308 | 96/7433 | response to stimulus |
| Protein processing in endoplasmic reticulum | ko04141 | 400/10308 | 215/7433 | cellular process |
| Ribosome biogenesis in eukaryotes | ko03008 | 113/10308 | 42/7433 | cellular component biogenesis |
| RNA degradation | ko03018 | 153/10308 | 77/7433 | metabolic process |
* The enriched pathways correspond to biological process GO terms of level 2 in GO vocabulary. These biological processes were still enriched in common carp, indicating the consistence between GO term comparison and KEGG pathway analysis.