Table 3.
Sensitivity for the Golden Gate Methylation Cancer Panel I platform when using the raw p-value (Raw), Benjamini & Hochberg (BH), Benjamini & Yekutieli (BY), Holm step down (Holm), the default q-value method which estimates π0 using a smoothing method (q-smoother), and the q-value method where π0 is estimated using the bootstrap (q-bootstrap).
| Dataset | Raw | BH | BY | Holm | q-smoother | q-bootstrap |
|---|---|---|---|---|---|---|
| Boks | 95.2 | 89.3 | 86.9 | 85.7 | 90.5 | 90.5 |
| Javierre Controls | 86.9 | 83.3 | 77.4 | 75.0 | 83.3 | 83.3 |
| Javierre Healthy Twins | 83.3 | 71.4 | 70.2 | 67.9 | 71.4 | 71.4 |
| Stein | 78.6 | 50.0 | 38.1 | 33.3 | 54.8 | 54.8 |