Table 4.

Specificity for the Golden Gate Methylation Cancer Panel I platform when using the raw p-value (Raw), Benjamini & Hochberg (BH), Benjamini & Yekutieli (BY), Holm step down (Holm), the default q-value method which estimates π₀ using a smoothing method (q-smoother), and the q-value method where π₀ is estimated using the bootstrap (q-bootstrap).

Dataset	Raw	BH	BY	Holm	q-smoother	q-bootstrap
Boks	84.5	95.1	98.9	99.4	94.2	94.2
Javierre Controls	85.5	98.5	99.8	99.9	96.7	96.7
Javierre Healthy Twins	96.3	99.9	99.9	99.9	99.9	99.9
Stein	97.8	99.9	100.0	100.0	99.8	99.8