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. Author manuscript; available in PMC: 2013 May 15.
Published in final edited form as: Biochemistry. 2012 May 1;51(19):4035–4048. doi: 10.1021/bi300378n

Table 3.

Distances (in Å units) for Ligand Binding in Complexes of ADH

Structure NAD C4N - Lig “C”a Zn - Lig O Ser48 OG - Lig O
PFB b, A subunit 3.36 ± 0.02 1.97 ± 0.01 2.48 ± 0.01
 B subunit 3.36 ± 0.03 1.98 ± 0.01 2.52 ± 0.03
TFE b, A subunit 3.43 ± 0.03 1.97 ± 0.01 2.48 ± 0.01
 B subunit 3.42 ± 0.06 1.98 ± 0.01 2.47 ± 0.10
FAlc c, ave of 4 3.40 ± 0.03* 1.96 ± 0.02* 2.52 ± 0.02*
1P1R, ave of 4d 3.48 ± 0.09 2.15 ± 0.04* 2.72 ± 0.03*
3BTO, ave of 4e 3.56 ± 0.03* 2.10 ± 0.04* 2.67 ± 0.04*
a

The ligands (Lig) and the atoms corresponding to the reactive carbon (“C”) are pentafluorobenzyl alcohol (C7), trifluoroethanol (C1, labeled as C2 for “ETF” in the PDB file), N-1-methylhexylformamide (C1), 3-butylthiolane 1-oxide (S6).

b

The distances and errors calculated with SHELXL.

c

The distances for the four values for the fluoroalcohols from the REFMAC refinements were averaged and compared to the averages of the four distances for the complexes with methylhexylformamide and 3-butylthiolane 1-oxide, and the * indicates that the differences relative to the complexes with fluoroalcohols were significant at p <0.01.

d

X-ray data for NADH and (R)-N-1-methylhexylformamide [CH3(CH2)4CH(CH3)NHCHO], Ki = 15 μM, complexed with ADH at 1.57 Å resolution; average of 4 subunits.66

e

X-ray data for NADH and (1S,3S)-3-butylthiolane 1-oxide, Ki = 0.72 μM, complexed with ADH at 1.66 Å resolution; average of 4 subunits.37