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. Author manuscript; available in PMC: 2013 Jan 1.
Published in final edited form as: Cancer Discov. 2011 Nov 7;2(1):82–93. doi: 10.1158/2159-8290.CD-11-0184

Figure 2. Copy number alterations in an archival breast cancer sample.

Figure 2

(A) Sequence coverage is shown for each target in the tumor sample as compared to a normal diploid sample. Exon targets from several genes with copy number gains and losses are highlighted. (B) Copy number correlation between exon capture and QPCR in sample FFPE 5. Quantitative PCR of FGFR1, CCND1, and NOTCH1 using 3 independent sets of primers was performed and average values for each gene were compared to exon capture copy number.