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. Author manuscript; available in PMC: 2013 Jan 1.
Published in final edited form as: Cancer Discov. 2011 Nov 7;2(1):82–93. doi: 10.1158/2159-8290.CD-11-0184

Table 2.

Actionable or prognostic genomic alterations in 10 FFPE tumor samples

SAMPLE TUMOR TYPE MEAN TARGET COVERAGE Actionable in Principle Prognostic / Diagnostic
Tier 1 Tier 2
FFPE 1 Colon 457 KRAS (Q61H)b KRAS (Q61H)a
FFPE 2 Colon 353 KRAS (G13C)a KRAS (G13C)a
FFPE 3 Colon 498 KRAS (G13C)a
PIK3CA (H1047R)b
KRAS (G13C)a
PIK3CA (H1047R)a
MSH2 (R680*)a
FFPE 4 Colon 300 BRAF (D594G)d
TSC1 (E258*)c
FFPE 5 Breast 472 CCND1 ampb
FGFR1 ampd
CCND1 ampd
FGFR1 ampa
CCND1 ampb
FFPE 6 Breast 532 BRCA1 (2-bp del)a BRCA1 (2-bp del)a
FFPE 7 Colon 250 KRAS (G13D)a
PIK3CA (E545K)b
KRAS (G13D)a
PIK3CA (E545K)a
FFPE 8 Breast 537 PIK3CA (H1047R)b PIK3CA (H1047R)a
FFPE 9 Colon 116 SMAD2 (S306*)b
FFPE 10 Colon 410 KRAS (Q61H)b KRAS (Q61H)a
a

clinically validated and approved alteration (for Tier 1 or Prognostic/Diagnostic) or specifically targeted alteration (for Tier 2) [shown in bold]

b

limited clinical evidence

c

clinical evidence in a different tumor type only

d

pre-clinical evidence only

Abbreviations: amp = amplification, del = deletion