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. 2012 May 17;8(5):e1002706. doi: 10.1371/journal.ppat.1002706

Table 2. NMR structure determination statistics of CCL2 in the free form and in complex with the fucosylated chitobiose (GlcNAcβ1,4[Fucα1,3]GlcNAc-spacer, the spacer [CH2]5COOH was truncated in the structure calculations to a methyl group.).

CCL2–carbohydrate complex
CCL2 free CCL2 carbohydrate
NMR distance and dihedral constraints
Distance restraints
Total NOE 2514 2054 42
Intra-residue 482 446 23
Inter-residue 2032 1608 19
 Sequential (|ij| = 1) 593 489 9
 Nonsequential (|ij|>1 ) 1439 1119 10
Hydrogen bonds 46 49
Protein–carbohydrate intermolecular 82
Total dihedral angle restraints 186 178
Protein
 φ 91* 85*
 ψ 95 91
Carbohydrate
HN-CO peptide bonds of acetamido 2
Structure statistics
Violations (mean and s.d.)
Number of distance constraint violations >0.2 Å 0.42±0.64 0.45±0.61
Number of dihedral angle violations >5° 0.05±0.22 4.75±1.48
Max. dihedral angle violation (°) 2.6±3.4 17.4±8.5
Max. distance constraint violation (Å) 0.24±0.07 0.20±0.04
Deviations from idealized geometry
Bond lengths (Å) 0.010 0.010
Bond angles (°) 2.29 2.38
Average pairwise r.m.s. deviation** (Å)
Protein (residues G22-V153)
 Heavy 0.98±0.14 1.18±0.15
 Backbone 0.45±0.10 0.71±0.13
carbohydrate
 All glycan heavy 0.47±0.21
Complex
 Protein and carbohydrate heavy 1.17±0.15
*

Phi values for prolines were omitted.

**

Pairwise r.m.s. deviation was calculated among 20 refined structures.