Table 5. Variation sites in DNA sequences of Bactrocera species for mitochondrial COI and 16S rDNA from various localities.
| Haplotype | Variation sites in DNA sequence | |||||||||||||||||
| 9 | 84 | 96 | 99 | 102 | 108 | 117 | 120 | 129 | 136 | 153 | 168 | 180 | 216 | 288 | 321 | 325 | 366 | |
| CR1 | T | T | T | C | T | T | A | C | T | C | A | A | T | C | T | A | T | C |
| CR2 | T | T | T | C | T | T | A | C | T | C | A | A | T | C | T | A | T | C |
| CR3 | C | A | C | T | C | A | G | A | C | T | T | G | C | A | C | G | C | T |
| 372 | 399 | 417 | 438 | 450 | 481 | 483 | 489 | 499 | 546 | 549 | 588 | 594 | 600 | 606 | 615 | 619 | 621 | |
| CR1 | C | A | T | T | C | T | A | C | T | T | C | C | T | A | C | T | C | A |
| CR2 | C | A | T | T | C | T | A | C | T | T | C | C | T | A | C | T | C | A |
| CR3 | T | G | C | C | T | C | T | T | C | C | T | T | G | C | T | A | T | G |
| 660 | 667 | 788 | 797 | 798 | 824 | 843 | 850 | 897 | 962 | 963 | 1035 | 1057 | ||||||
| CR1 | C | A | G | C | A | C | A | A | G | C | T | C | T | |||||
| CR2 | A | A | G | C | A | C | A | A | G | C | T | C | T | |||||
| CR3 | C | G | A | T | C | T | G | G | T | A | C | T | C | |||||
Haplotype CRI consisted of B. caudata samples Bcau1, Bcau2, Bacau3, Bcau4, Bcau5, Bcau7, Bcau8, Bcau9, Bcau10, Bacau11, Bcau16, Bcau18, Bcau19, Bcau20 and Bcau21 from Peninsular Malaysia; CR2 consisted of Bcau14 from Peninsular Malaysia; while CR3 consisted of B. caudata samples Bcau12, Bcau13 and Bcau15 from Indonesia.