Table 1. k1 estimates for relationships within and between families reported in Figure 3.
Sample 1 | Sample 2 | IBS2*_ratio | K0 | K1 | K2 | CO | pIBD0 | pIBD1 | pIBD2 |
---|---|---|---|---|---|---|---|---|---|
NA12977 | NA12978 | 0.721 | 0.753 | 0.244 | 0.003 | 25 | 0.716 | 0.280 | 0.005 |
NA13055 | NA13181 | 0.721 | 0.826 | 0.167 | 0.008 | 25 | 0.888 | 0.112 | 0 |
NA13055 | NA13057 | 0.719 | 0.826 | 0.167 | 0.008 | 25 | 0.887 | 0.113 | 0 |
NA13057 | NA13180 | 0.718 | 0.826 | 0.166 | 0.008 | 25 | 0.887 | 0.113 | 0 |
NA13180 | NA13181 | 0.719 | 0.826 | 0.166 | 0.008 | 25 | 0.888 | 0.112 | 0 |
NA11931 | NA11933 | 0.709 | 0.870 | 0.130 | 0 | 25 | 0.884 | 0.116 | 0 |
NA11035 | NA13356 | 0.694 | 0.890 | 0.110 | 0 | 25 | 0.885 | 0.114 | 0.002 |
NA13115 | NA13116 | 0.669 | 0.906 | 0.092 | 0.002 | 25 | 0.931 | 0.069 | 0 |
NA13111 | NA13115 | 0.687 | 0.907 | 0.087 | 0.006 | 25 | 0.897 | 0.100 | 0.003 |
NA13112 | NA13114 | 0.659 | 0.918 | 0.083 | 0 | 25 | 0.952 | 0.037 | 0.011 |
NA13111 | NA13114 | 0.654 | 0.917 | 0.082 | 0 | 25 | 0.910 | 0.090 | 0 |
NA11035 | NA13180 | 0.665 | 0.918 | 0.082 | 0 | 21 | 0.992 | 0.004 | 0.004 |
NA11035 | NA13055 | 0.666 | 0.918 | 0.082 | 0 | 20 | 0.993 | 0.003 | 0.004 |
NA13111 | NA13116 | 0.668 | 0.919 | 0.082 | 0 | 25 | 0.926 | 0.068 | 0.007 |
NA13112 | NA13116 | 0.673 | 0.926 | 0.070 | 0.004 | 25 | 0.947 | 0.050 | 0.003 |
NA13112 | NA13115 | 0.681 | 0.936 | 0.064 | 0 | 20 | 0.943 | 0.057 | 0 |
NA11035 | NA13181 | 0.660 | 0.947 | 0.053 | 0 | 1 | 0.994 | 0.007 | 0 |
NA11035 | NA13057 | 0.659 | 0.947 | 0.053 | 0 | 1 | 0.993 | 0.007 | 0 |
NA13111 | NA13112 | 0.684 | 0.949 | 0.051 | 0 | 22 | 0.944 | 0.056 | 0 |
NA13180 | NA13356 | 0.688 | 0.963 | 0.037 | 0 | 11 | 1 | 0 | 0 |
NA13055 | NA13356 | 0.690 | 0.963 | 0.037 | 0 | 11 | 1 | 0 | 0 |
NA13181 | NA13356 | 0.683 | 0.969 | 0.031 | 0 | 0 | 1 | 0 | 0 |
NA13057 | NA13356 | 0.682 | 0.969 | 0.031 | 0 | 0 | 1 | 0 | 0 |
NA12978 | NA12980 | 0.672 | 0.985 | 0.015 | 0 | 1 | 0.963 | 0.037 | 0 |
NA07050 | NA11932 | 0.674 | 0.989 | 0.011 | 0 | 0 | 1 | 0 | 0 |
NA12979 | NA12980 | 0.674 | 0.990 | 0.010 | 0 | 1 | 0.981 | 0.012 | 0.007 |
NA12977 | NA12979 | 0.632 | 0.991 | 0.009 | 0 | 1 | 0.965 | 0.035 | 0 |
NA12978 | NA12979 | 0.669 | 0.992 | 0.008 | 0 | 0 | 0.985 | 0.015 | 0 |
NA12465 | NA12466 | 0.661 | 0.996 | 0.004 | 0 | 0 | 1 | 0 | 0 |
NA12921 | NA12924 | 0.664 | 0.997 | 0.003 | 0 | 0 | 1 | 0 | 0 |
NA12977 | NA12980 | 0.628 | 0.997 | 0.003 | 0 | 1 | 0.992 | 0.003 | 0.004 |
Abbreviations: CO, assignment of cousin status by RELPAIR per 25 trials; K0, K1, K2, estimates of k0, k1, k2, respectively; pIBD0, pIBD1, pIBD2, estimates of k0, k1, k2, respectively.
Each pairwise comparison had estimates of Cotterman coefficients given by kcoeff (K0, K1, K2), RELPAIR (CO) and PREST (pIBD0, pIBD1, pIBD2).