| Gene name | Genes on chromosomea | Coding region | ||||
|---|---|---|---|---|---|---|
| 9311 | PA64s | SNP no.b | SNP ratec | Indel no.d | Indel lengthe | |
| OsNCED1 | Chr02_3173 | Chr02_4135 | 5|5|0 | 0.0026|0.0026|0 | 1|4|1 | 48|239|189 |
| OsNCED2 | Chr12_1047 | Chr12_0855 | 10|0|9 | 0.0057|0|0.0051 | 0|0|0 | 0|0|0 |
| OsNCED3 | Chr03_3073 | Chr03_2198 | 8|16|8 | 0.0044|0.0088|0.004 | 0|2|2 | 0|129|129 |
| OsNCED4 | Chr07_0366 | Chr07_0350 | 1|9|8 | 0.0006|0.0051|0.004 | 1|0|1 | 177|0|177 |
| OsNCED5 | Chr12_2021 | Chr12_1628 | 1|4|1 | 0.0007|0.0022|0.001 | 0|0|0 | 0|0|0 |
| OsCYP707A5 | Chr02_3170 | Chr02_4132 | 1|2|0 | 0.0007|0.0014|0 | 0|2|2 | 0|306|306 |
| OsCYP707A6 | Chr08_2087 | Chr08_1729 | 1|6|0 | 0.0007|0.0036|0 | 0|2|0 | 0|159|0 |
| OsCYP707A7 | Chr09_1329 | Chr09_1219 | 1|4|0 | 0.0007|0.0027|0 | 0|0|0 | 0|0|0 |
| OsGA20ox1 | Chr03_4546 | Chr03_3632 | 2|2|0 | 0.0018|0.0018|0 | 0|0|0 | 0|0|0 |
| OsGA20ox2 | Chr01_4645 | Chr01_4410 | 2|2|0 | 0.0017|0.0017|0 | 2|2|2 | 126|381|411 |
| OsGA20ox3 | Chr12_1260 | Chr12_1026 | 0|0|0 | 0|0|0 | 0|0|0 | 0|0|0 |
| OsGA20ox4 | Chr05_1936 | Chr05_1801 | 41|41|0 | 0.031|0.031|0 | 2|1|1 | 540|369|171 |
| OsGA3ox1 | Chr05_0563 | Chr05_0539 | 3|5|2 | 0.0026|0.0043|0.017 | 2|6|4 | 18|84|66 |
| OsGA3ox2 | Chr01_0611 | Chr01_0665 | 3|3|0 | 0.0027|0.0027|0 | 1|1|0 | 9|9|0 |
| OsGA2ox1 | Chr05_0449 | Chr05_0429 | 3|2|2 | 0.00247|0.0017|0.002 | 1|1|1 | 63|471|534 |
| OsGA2ox2 | Chr01_0837 | Chr01_0926 | 81|5|57 | 0.08|0.0049|0.057 | 4|1|5 | 276|3|279 |
| OsGA2ox3 | Chr01_3778 | Chr01_3512 | 1|1|0 | 0.001|0.001|0 | 0|0|0 | 0|0|0 |
| OsGA2ox4 | Chr05_2528 | Chr05_2378 | 3|32|8 | 0.0028|0.0318|0.011 | 1|10|2 | 336|276|62 |
| OsGA2ox5 | Chr05_2857 | Chr05_2689 | 59|6|65 | 0.0527|0.0056|0.061 | 7|2|9 | 60|95|154 |
| OsGPCR | Chr10_1648 | Chr10_1340 | 10|40|38 | 0.0072|0.0288|0.027 | 2|5|4 | 597|388|553 |
| OsGID1 | Chr05_1857 | Chr05_1721 | 20|20|18 | 0.0119|0.0019|0.017 | 5|0|5 | 708|0|708 |
aMatched genes of 9311 and PA64s with chromosome and gene ID information.
bNumber of SNPs between the rice cultivars. | Number of SNPs between PA64s and Nipponbare | Number of SNPs between 9311 and PA64s. NA strands for poor similarity.
cRate of SNPs between 9311 and Nipponbare | Rate of SNPs between PA64s and Nipponbare | Rate of SNPs between 9311 and PA64s.
dNumber of Indels between 9311 and Nipponbare | Number of Indels between PA64s and Nipponbare | Number of Indels between 9311 and PA64s.
eTotal length (bp) of Indels between 9311 and Nipponbare | Total length (bp) of Indels between PA64s and Nipponbare | Total length (bp) of Indels between 9311 and PA64s.