Skip to main content
. 2012 Feb 7;3:17. doi: 10.3389/fpls.2012.00017

Table A4.

List of all the sequences used in the reconstruction of PIN, AUX/LAX, and ABCB families phylogenies.

Phytozome database locus or GenBank accession number Assigned name
ABCBs
ppa000359m.g Ppe000359
ppa000340m.g Ppe000340
ppa000269m.g Ppe000269
ppa000313m.g Ppe000313
ppa000316m.g Ppe000316
ppa023953m.g Ppe023953
ppa000315m.g Ppe000315
ppa015302m.g Ppe015302
ppa000363m.g Ppe000363
ppa015387m.g Ppe015387
ppa015389m.g Ppe015389
ppa017251m.g Ppe017251
ppa023915m.g Ppe023915
ppa018252m.g Ppe018252
ppa000312m.g Ppe000312
ppa026713m.g Ppe026713
ppa000338m.g Ppe000338
ppa0208157m.g Ppe020815
POPTR_0006s12590 PtrABCB11
POPTR_0016s09680 PtrABCB12
POPTR_0002s18860 PtrABCB2
POPTR_0001s44320 PtrABCB3
POPTR_0001s34280 PtrABCB4
POPTR_0010s00540 PtrABCB5
POPTR_0010s21720 PtrABCB6
POPTR_0017s11030 PtrABCB7
POPTR_0002s18850 PtrABCB8
POPTR_0017s12120 PtrABCB9
POPTR_0014s10860 PtrABCB10
POPTR_0014s10870 PtrABCB11
POPTR_0018s09420 PtrABCB12
POPTR_0014s10880.1 PtrABCB13
POPTR_0014s10880.2 PtrABCB14
POPTR_0015s00250 PtrABCB15
POPTR_0002s02110 PtrABCB16
POPTR_0001s16560 PtrABCB17
POPTR_0008s05020 PtrABCB18
POPTR_0017s11750 PtrABCB19
POPTR_0011s13720 PtrABCB20
GRMZM2G315375_T01 Zm2G315375-1
GRMZM2G085236_T01 Zm2G085236-1
GRMZM2G085236_T02 ZmG085236-2
GRMZM2G004748_T01 ZmG004748-1
GRMZM2G119894_T01 Zm2G119894-1
GRMZM2G119894_T03 Zm2G119894-3
GRMZM2G086730_T01 Zm2G086730
AC233882.1_FGT003 ZmAC233882-1_FG003
GRMZM2G025860_T01 Zm2G025860
GRMZM2G167658_T01 Zm2G167658
GRMZM2G111462_T01 Zm2G111462
GRMZM2G085111_T02 Zm2G085111-1
GRMZM2G333183_T01 Zm2G333183
AC233939.1_FGT002 ZmAC233939-1_FG002
GRMZM2G441722_T01 Zm2G441722
Eucrg.J2160.1 EgrJ02160
Eucgr.D00350.1 EgrD00350
Eucgr.K00568.1 EgrK00568-1
Eucgr.K02930.1 EgrK02930
Eucgr.E00260.1 EgrE00260
Eucgr.C01000.1 EgrC01000
Eucgr.A01005.1 EgrA01005
Eucgr.A01006.1 EgrA01006-1
Eucgr.A01006.2 EgrA01006-2
Eucgr.J01214.1 EgrJ01214
Eucgr.J02615.1 EgrJ02615
Eucgr.H00958.1 EgrH00958
Eucgr.J00052.1 EgrJ00052
cassava4.1_000398m.g Mes000398
cassava4.1_000345m.g Mes000345
cassava4.1_000359m.g Mes000359
cassava4.1_030988m.g Mes030988
cassava4.1_000410m.g Mes000410
cassava4.1_000306m.g Mes000306
cassava4.1_000385m.g Mes000385
cassava4.1_000386m.g Mes000386
cassava4.1_000399m.g Mes000399
cassava4.1_000409m.g Mes000409
cassava4.1_026648m.g Mes026648
cassava4.1_021429m.g Mes021429
Medtr5g029640.1 Mtr5g029640
Medtr1g031500.1 Mtr1g031500
Medtr2g022080.1 Mtr2g022080
Medtr6g089620.1 Mtr6g089620
Medtr2g021930.1 Mtr2g021930
Medtr1g105850.1 Mtr1g105850
Medtr8g078020.1 Mtr8g078020
Medtr6g009670.1 Mtr6g009670
Medtr8g133940.1 Mtr8g133940
Medtr3g110110.1 Mtr3g110110
Medtr8g133950.1 Mtr8g133950
Medtr8g133840.1 Mtr8g133840
Medtr4g107320.1 Mtr4g107320
Medtr4g107560.1 Mtr4g107560
Medtr6g009780.1 Mtr6g009780
Medtr6g009880.1 Mtr6g009880
Medtr6g009840.1 Mtr6g009840
Medtr3g136400.1 Mtr3g136400
Medtr7g046830.1 Mtr7g046830
Medtr6g009450.1 Mtr6g009450
Medtr3g102650.1 Mtr3g102650
Medtr8g025810.1 Mtr8g025810
Medtr4g110940.1 Mtr4g110940
GSVIVT00000633001 VvT00000633001
GSVIVT00003365001 VvT00003365001
GSVIVT00003375001 VvT00003375001
GSVIVT00003377001 VvT00003377001
GSVIVT00014386001 VvT00014386001
GSVIVT00016667001 VvT00016667001
GSVIVT00018550001 VvT00018550001
GSVIVT00019727001 VvT00019727001
GSVIVT00019729001 VvT00019729001
GSVIVT00020929001 VvT00020929001
GSVIVT00024397001 VvT00024397001
GSVIVT00028243001 VvT00028243001
GSVIVT00030719001 VvT00030719001
GSVIVT00034033001 VvT00034033001
GSVIVT00037129001 VvT00037129001
Sb01g039110.1 SbABCB1
Sb02g019540.1 SbABCB2
Sb03g011860.1 SbABCB3
Sb03g023740.1 SbABCB4
Sb03g031990.1 SbABCB5
Sb03g032000.1 SbABCB6
Sb03g032030.1 SbABCB7
Sb03g033290.1 SbABCB8
Sb03g047490.1 SbABCB9
Sb04g006087.1 SbABCB10
Sb04g006090.1 SbABCB11
Sb04g006100.1 SbABCB12
Sb04g022480.1 SbABCB13
Sb04g031170.1 SbABCB14
Sb06g001440.1 SbABCB15
Sb06g018860.1 SbABCB16
Sb06g020350.1 SbABCB17
Sb06g030350.1 SbABCB18
Sb07g003510.1 SbABCB19
Sb07g003520.1 SbABCB20
Sb07g023730.1 SbABCB21
Sb09g002940.1 SbABCB22
Sb09g027320.1 SbABCB23
Sb09g027330.1 SbABCB24
e_gw1.13.597.1 SmABCB1
fgenesh1_pm.C_scaffold_6000062 SmABCB2
fgenesh2_pg.C_scaffold_13000013 SmABCB3
e_gw1.6.146.1 SmABCB4
estExt_Genewise1Plus.C_350372 SmABCB5
fgenesh1_pm.C_scaffold_42000045 SmABCB6
e_gw1.0.369.1 SmABCB7
fgenesh2_pg.C_scaffold_9000128 SmABCB8
estExt_Genewise1.C_210058 SmABCB9
fgenesh1_pm.C_scaffold_2000054 SmABCB10
e_gw1.73.37.1 SmABCB11
estExt_Genewise1Plus.C_90010 SmABCB12
e_gw1.0.1863.1 SmABCB13
e_gw1.22.307.1 SmABCB14
fgenesh1_pm.C_scaffold_0000169 SmABCB15
estExt_Genewise1.C_00569 SmABCB16
e_gw1.73.196.1 SmABCB17
fgenesh1_pm.C_scaffold_15000068 SmABCB18
LOC_Os01g18670.1 OsABCB1
LOC_Os01g35030.1 OsABCB3
LOC_Os01g50080.1 OsABCB4
LOC_Os01g50100.1 OsABCB5
LOC_Os01g50160.1 OsABCB6
LOC_Os01g52550.1 OsABCB7
LOC_Os01g74470.1 OsABCB8
LOC_Os02g09720.1 OsABCB9
LOC_Os02g46680.1 OsABCB11
LOC_Os03g08380.1 OsABCB12
LOC_Os03g17180.1 OsABCB13
LOC_Os04g40570.1 OsABCB15
LOC_Os05g47490.1 OsABCB18
LOC_Os05g47500.1 OsABCB19
LOC_Os08g05690.1 OsABCB20
LOC_Os08g05710.1 OsABCB21
LOC_Os08g45030.1 OsABCB22
Rco30078.t000079 Rc30078_t000079
Rco30054.t000025 Rc30054_t000025
Rco30076.t000120 Rc30076_t000120
Rco30076.t000122 Rc30076_t000122
Rco28180.t000015 Rc28180_t000015
Rco30170.t000796 Rc30170_t000796
Rco29581.t000001 Rc29581_t000001
Rco29693.t000124 Rc29693_t000124
Rco29822.t000171 Rc29822_t000171
Rco29889.t000174 Rc29889_t000174
Rco29889.t000175 Rc29889_t000175
Pp1s252_67V6.1 Pp1s252_67
Pp1s38_321V6.1 Pp1s38_321
Pp1s28_282V6.1 Pp1s28_282
Pp1s173_145V6.1 Pp1s173_145
Pp1s1_780V2.1 Pp1s1_780
Pp1s397_2V6.1 Pp1s397_2
Pp1s188_78V6.1 Pp1s188_78
Pp1s391_45V6.1 Pp1s391_45
Pp1s338_12V6.1 Pp1s338_12
Pp1s29_108V2.1 Pp1s29_108
Vc_estExt_fgenesh4_pg.C_30286 VcProt1
Cre17.g725200 Cre17_g725200
Cre17.g725150 Cre17_g725150
AT2G36910 AtABCB1
AT4G25960 AtABCB2
AT4G01820 AtABCB3
AT2G47000 AtABCB4
AT4G01830 AtABCB5
AT2G39480 AtABCB6
AT5G46540 AtABCB7
AT3G30875 AtABCB8
AT4G18050 AtABCB9
AT1G10680 AtABCB10
At1g02520 AtABCB11
AT1G02530 AtABCB12
AT1G27940 AtABCB13
AT1G28010 AtABCB14
AT3G28345 AtABCB15
AT3G28360 AtABCB16
AT3G28380 AtABCB17
AT3G28390 AtABCB18
AT3G28860 AtABCB19
AT3G55320 AtABCB20
AT3G62150 AtABCB21
AT3G28415 AtABCB22
orange1.1g000851m.g Csi_g000851
orange1.1g000777m.g Csi_g000777
orange1.1g000789m.g Csi_g000789
orange1.1g000909m.g Csi_g000909
orange1.1g000830m.g Csi_g000830
orange1.1g000406m.g Csi_g000406
orange1.1g000687m.g Csi_g000687
orange1.1g000856m.g Csi_g000856
AcoGoldSmith_v1.000232m.g Aco000232
AcoGoldSmith_v1.022827m.g Aco022827
AcoGoldSmith_v1.027230m.g Aco027230
AcoGoldSmith_v1.000200m.g Aco000200
AcoGoldSmith_v1.018338m.g Aco018338
AcoGoldSmith_v1.000314m.g Aco000314
AcoGoldSmith_v1.022346m.g Aco022346
AcoGoldSmith_v1.026987m.g Aco026987
AcoGoldSmith_v1.022633m.g Aco022633
AcoGoldSmith_v1.000202m.g Aco000202
AcoGoldSmith_v1.000201m.g Aco000201
AcoGoldSmith_v1.000230m.g Aco000230
AcoGoldSmith_v1.000215m.g Aco000215
AcoGoldSmith_v1.000236m.g Aco000236
AcoGoldSmith_v1.000229m.g Aco000229
AUX/LAXs
ppa005323m.g Ppe005323
ppa005057m.g Ppe005057
ppa004949m.g Ppe004949
ppa004865m.g Ppe004865
POPTR_0006s09940 PtrAUX1/LAX5
POPTR_0016s12100 PtrAUX2/LAX1
POPTR_0010s19840 PtrAUX3/LAX2
POPTR_0008s06630 PtrAUX4/LAX6
POPTR_0004s17860 PtrAUX5/LAX7
POPTR_0009s13470 PtrAUX6/LAX3
POPTR_0005s16020 PtrAUX7/LAX8
POPTR_0002s08750 PtrAUX8/LAX4
GRMZM2G067022_T01 Zm2G067022
GRMZM2G127949_T01 Zm2G127949
GRMZM2G045057_T01 Zm2G045057
GRMZM2G149481_T01 Zm2G149481
GRMZM2G129413_T01 Zm2G129413
Eucgr.F03758.1 EgrF03758_1
Eucgr.K02992.2 EgrK02992_2
Eucgr.G03044.2 EgrG03044_2
Eucgr.G01769.2 EgrG01769_2
Eucgr.A00514.2 EgrA00514_2
cassava4.1_006838m.g Mes006838
cassava4.1_006423m.g Mes006423
cassava4.1_006788m.g Mes006788
cassava4.1_006570m.g Mes006570
cassava4.1_006783m.g Mes006783
cassava4.1_006474m.g Mes006474
cassava4.1_007093m.g Mes007093
Medtr3g024670.1 Mtr3g024670
Medtr3g097960.1 Mtr3g097960
Medtr5g089600.1 Mtr5g089600
GSVIVT01008917001 VvT01008917001
GSVIVT01024054001 VvT01024054001
GSVIVT01032855001 VvT01032855001
GSVIVT01033986001 VvT01033986001
Sb01g026240.1 SbLAX1
Sb01g041270.1 SbLAX2
Sb03g040320.1 SbLAX3
Sb05g004250.1 SbLAX4
Sb09g021990.1 SbLAX5
estExt_Genewise1Plus.C_20968 SmAUX1
estExt_fgenesh2_pg.C_50586 SmAUX2
LOC_Os01g63770.1 OsLAX1
LOC_Os03g14080.1 OsLAX2
LOC_Os05g37470.1 OsLAX3
LOC_Os10g05690.1 OsLAX4
LOC_Os11g06820.1 OsLAX5
Rco29669.t000030 Rc29669_t000030
Rco29741.t000002 Rc29741_t000002
Rco29908.t000197 Rc29908_t000197
Rco29969.t000004 Rc29969_t000004
Pp1s90_46V6.1 Pp1s90_46
Pp1s213_89V6.1 Pp1s213_89
Pp1s211_67V6.1 Pp1s211_67
AT2G38120.1 AtAUX1
AT5G01240.1 AtLAX1
AT2G21050.1 AtLAX2
AT1G77690.1 AtLAX3
orange1.1g011392m.g Csi_g011392
orange1.1g011022m.g Csi_g011022
orange1.1g012371m.g Csi_g012371
orange1.1g011966m.g Csi_g011966
AcoGoldSmith_v1.004219m.g Aco004219
AcoGoldSmith_v1.004342m.g Aco004342
AcoGoldSmith_v1.003895m.g Aco003895
AY864733 Pto-AY864733
AF115543 Ptt-AF115543
PINs
ppa022797m.g Ppe022797
ppa003159m.g Ppe003159
ppa024134m.g Ppe024134
ppa002528m.g Ppe002528
ppa025174m.g Ppe025174
ppa002944m.g Ppe002944
ppa021573m.g Ppe021573
ppa007621m.g Ppe007621
POPTR_0015s04570 PtrPIN1
POPTR_0016s03450 PtrPIN2
POPTR_0010s12320 PtrPIN3
POPTR_0005s20990 PtrPIN4
POPTR_0002s07310 PtrPIN5
POPTR_0008s12830 PtrPIN6
POPTR_0012s04470 PtrPIN7
POPTR_0006s03540 PtrPIN8
POPTR_0018s13610 PtrPIN9
POPTR_0001s21230 PtrPIN10
POPTR_0013s08510 PtrPIN11
POPTR_0019s07990 PtrPIN12
POPTR_0004s12310 PtrPIN13
POPTR_0017s11440 PtrPIN14
POPTR_0014s14390 PtrPIN15
XM_002336619.1 PtrPIN16
ZmPIN1a_GRMZM2G098643 ZmPIN1a
ZmPIN1b_GRMZM2G074267 ZmPIN1b
ZmPIN1c_GRMZM2G149184 ZmPIN1c
ZmPIN1d_GRMZM2G171702_T01 ZmPIN1d
ZmPIN2 ZmPIN2
ZmPIN5a-GRMZM2G025742 ZmPIN5a
ZmPIN5b-GRMZM2G148648 ZmPIN5b
ZmPIN5c-GRMZM2G040911 ZmPIN5c
ZmPIN8_GRMZM5G839411 ZmPIN8
ZmPIN9_GRMZM5G859099 ZmPIN9
ZmPIN10a-GRMZM2G126260 ZmPIN10a
ZmPIN10b-GRMZM2G160496 ZmPIN10b
Eucgr.F04265.1 EgrF04265_1
Eucgr.K02271.1 EgrK02271_1
Eucgr.G02187.1 EgrG02187_1
Eucgr.G02549.1 EgrG02549_1
Eucgr.B01406.1 EgrB01406_1
Eucgr.B02902.1 EgrB02902_1
Eucgr.B00948.1 EgrB00948_1
Eucgr.C00078.1 EgrC00078_1
Eucgr.A02229.1 EgrA02229_1
Eucgr.H01390.1 EgrH01390_1
Eucgr.H01391.1 EgrH01391_1
Eucgr.I01919.1 EgrI01919_1
Eucgr.G02548.1 EgrG02548_1
Eucgr.B01405.1 EgrB01405_1
Eucgr.B01403.1 EgrB01403_1
Eucgr.H01382.1 EgrH01382_1
cassava4.1_003807m.g Mes003807
cassava4.1_030090m.g Mes030090
cassava4.1_029078m.g Mes029078
cassava4.1_003367m.g Mes003367
cassava4.1_006998m.g Mes006998
cassava4.1_026579m.g Mes026579
cassava4.1_003794m.g Mes003794
cassava4.1_029063m.g Mes029063
cassava4.1_033391m.g Mes033391
cassava4.1_010688m.g Mes010688
cassava4.1_010607m.g Mes010607
Medtr2g043210 Mtr2g043210
Medtr4g154810 Mtr4g154810
Medtr6g083450 Mtr6g083450
Medtr7g008720 Mtr7g008720
Medtr7g089430 Mtr7g089430
Medtr7g106430 Mtr7g106430
Medtr8g130020 Mtr8g130020
Medtr8g130040 Mtr8g130040
MtrAAM55297 MtrAAM55297
MtrAY115838 MtrAY115838
MtrAAT48627 MtrAAT48627
GSVIVT00014302001 VvT00014302001
GSVIVT00017824001 VvT00017824001
GSVIVT00020886001 VvT00020886001
GSVIVT00023254001 VvT00023254001
GSVIVT00023255001 VvT00023255001
GSVIVT00025093001 VvT00025093001
GSVIVT00025108001 VvT00025108001
GSVIVT00030482001 VvT00030482001
GSVIVT00031315001 VvT00031315001
Sb02g029210.1 SbPIN1
Sb03g029320.1 SbPIN2
Sb03g032850.1 SbPIN3
Sb03g037350.1 SbPIN4
Sb03g043960.1 SbPIN5
Sb04g028170.1 SbPIN6
Sb05g002150.1 SbPIN7
Sb07g026370.1 SbPIN8
Sb10g004430.1 SbPIN9
Sb10g008290.1 SbPIN10
Sb10g026300.1 SbPIN11
e_gw1.26.13.1 Sm102666
e_gw1.59.169.1 Sm119024
fgenesh1_pm.C_scaffold_9000007 Sm231064
fgenesh1_pm.C_scaffold_59000022 Sm234325
estExt_fgenesh1_pm.C_500006 Sm268490
e_gw1.21.81.1 Sm99301
Os01g45550.1 OsPIN10a
Os01g51780 OsPIN8
Os01g58860 OsPIN9
Os01g69070 OsPIN5a
Os02g50960.1 OsPIN1b
Os05g50140 OsPIN10b
Os06g12610 OsPIN1a
Os06g44970 OsPIN2
Os08g41720 OsPIN5b
Os09g32770 OsPIN5c
Os11g04190 OsPIN1c
Os12g04000 OsPIN1d
Rco27985.t000045 Rc27985_t000045
Rco29662.t000026 Rc29662_t000026
Rco29816.t000014 Rc29816_t000014
Rco30180.t000054 Rc30180_t000054
Rco29822.t000149 Rc29822_t000149
Rco30128.t000486 Rc30128_t000486
Pp1s10_17V6.1 PpPIN1A
Pp1s18_186V6.1 PpPIN1B
Pp1s32_43V6.1 PpPIN1C
Pp1s79_126V6 PpPIN1D
AT1G73590 AtPIN1
AT5G57090 AtPIN2
AT1G70940 AtPIN3
AT2G01420 AtPIN4
AT5G16530 AtPIN5
AT1G77110 AtPIN6
AT1G23080 AtPIN7
AT5G15100 AtPIN8
orange1.1g006199m.g Csi_g006199
orange1.1g007826m.g Csi_g007826
orange1.1g036474m.g Csi_g036474
orange1.1g041301m.g Csi_g041301
orange1.1g048649m.g Csi_g048649
orange1.1g035534m.g Csi_g035534
orange1.1g007420m.g Csi_g007420
orange1.1g018360m.g Csi_g018360
orange1.1g019021m.g Csi_g019021
AcoGoldSmith_v1.001931m.g Aco001931
AcoGoldSmith_v1.018694m.g Aco018694
AcoGoldSmith_v1.018139m.g Aco018139
AcoGoldSmith_v1.016169m.g Aco016169
AcoGoldSmith_v1.007499m.g Aco007499
AcoGoldSmith_v1.021242m.g Aco021242
AY302060 PtoPIN1-like
AF190881 PttPIN1
AF515435 PttPIN2
AF515434 PttPIN3