Skip to main content
. 2012 Jan 16;3:3. doi: 10.3389/fpls.2012.00003

Table 1.

Plant homologs of the peroxisomal ABC transporter from Arabidopsis.

Organism CTS (PLAZA gene ID) Identity (%) Length (AA) Molecular weight (kDa) Sub-group
L. japonicus No hit
M. trunculata MT3G36770 77 1335 150.15 FS
G. max GM11G38160 77 1287 144.79 FS
M. domestica MD07G005530 76 1952 220.18 FS
M. esculenta ME05923G00060 76 796 89.49 HS
R. communis RC30186G00190 75 1339 151.05 FS
P. trichocarpa PT05G07590 78 987 110.4 HS
A. thaliana AT4G39850 100 1337 149.6 FS
A. lyrata AL7G02070 98 1337 149.55 FS
C. papaya CP00213G00160 81 465 51.76 HS
V. vinifera VV19G09290 26 697 78.83 HS
O. sativa OS01G73530 72 1326 147.95 FS
B. distachyon BD2G61780 74 1251 140.38 FS
S. bicolor SB03G047010 72 1324 148.03 FS
Z. mays ZM08G17060 72 1326 148.26 FS
S. moellendorffii SM00029G00480 62 1306 145.81 FS
P. patens PP00150G00750 65 1271 141.49 FS
O. lucimarinus OL02G00720 32 583 64.69 HS
O. tauri OT02G06480 26 722 79.43 HS
Micromonas. sp. RCC299 No hit
V. carteri No hit
C. reinhardtii CR15G00650 26 753 81.34 HS

The table summarizes the information of the genes used for the distribution analysis of the CTS gene (Figure 4). The following information is listed: PLAZA gene identity (ID) number of the reciprocal hit in the individual genome, relative identity of the genes to the Arabidopsis homolog, molecular weight, amino acid (AA) length, and molecular structure half or full size (HS or FS). The pairwise normalized identities were calculated by dividing the number of identical positions by the length of the shorter protein. As a cut-off value we used a normalized sequence identity greater than 25%. In case for A. thaliana the best match was the query sequence itself and has been highlighted in bold.