Table 1.
Plant homologs of the peroxisomal ABC transporter from Arabidopsis.
Organism | CTS (PLAZA gene ID) | Identity (%) | Length (AA) | Molecular weight (kDa) | Sub-group |
---|---|---|---|---|---|
L. japonicus | No hit | – | – | – | – |
M. trunculata | MT3G36770 | 77 | 1335 | 150.15 | FS |
G. max | GM11G38160 | 77 | 1287 | 144.79 | FS |
M. domestica | MD07G005530 | 76 | 1952 | 220.18 | FS |
M. esculenta | ME05923G00060 | 76 | 796 | 89.49 | HS |
R. communis | RC30186G00190 | 75 | 1339 | 151.05 | FS |
P. trichocarpa | PT05G07590 | 78 | 987 | 110.4 | HS |
A. thaliana | AT4G39850 | 100 | 1337 | 149.6 | FS |
A. lyrata | AL7G02070 | 98 | 1337 | 149.55 | FS |
C. papaya | CP00213G00160 | 81 | 465 | 51.76 | HS |
V. vinifera | VV19G09290 | 26 | 697 | 78.83 | HS |
O. sativa | OS01G73530 | 72 | 1326 | 147.95 | FS |
B. distachyon | BD2G61780 | 74 | 1251 | 140.38 | FS |
S. bicolor | SB03G047010 | 72 | 1324 | 148.03 | FS |
Z. mays | ZM08G17060 | 72 | 1326 | 148.26 | FS |
S. moellendorffii | SM00029G00480 | 62 | 1306 | 145.81 | FS |
P. patens | PP00150G00750 | 65 | 1271 | 141.49 | FS |
O. lucimarinus | OL02G00720 | 32 | 583 | 64.69 | HS |
O. tauri | OT02G06480 | 26 | 722 | 79.43 | HS |
Micromonas. sp. RCC299 | No hit | – | – | – | – |
V. carteri | No hit | – | – | – | – |
C. reinhardtii | CR15G00650 | 26 | 753 | 81.34 | HS |
The table summarizes the information of the genes used for the distribution analysis of the CTS gene (Figure 4). The following information is listed: PLAZA gene identity (ID) number of the reciprocal hit in the individual genome, relative identity of the genes to the Arabidopsis homolog, molecular weight, amino acid (AA) length, and molecular structure half or full size (HS or FS). The pairwise normalized identities were calculated by dividing the number of identical positions by the length of the shorter protein. As a cut-off value we used a normalized sequence identity greater than 25%. In case for A. thaliana the best match was the query sequence itself and has been highlighted in bold.