Table 2.
Plant homologs of the peroxisomal MC-type transporter from Arabidopsis.
| Organism | PNC1 (PLAZA gene ID) | Identity (%) | PNC2 (PLAZA gene ID) | Identity (%) | PXN (PLAZA gene ID) | Identity (%) |
|---|---|---|---|---|---|---|
| L. japonicus | LJ5G027490 | 63 | LJ5G027490 | 63 | LJ0G084980 | 55 |
| M. trunculata | MT5G33690 | 70 | MT5G33690 | 64 | MT5G64320 | 66 |
| G. max | GM02G11800 | 72 | GM02G11800 | 67 | GM18G03400 | 66 |
| M. domestica | MD00G459280 | 71 | MD00G150490 | 72 | MD01G023270 | 51 |
| M. esculenta | ME03905G00190 | 72 | ME03905G00190 | 71 | ME04268G00320 | 70 |
| R. communis | RC30128G01600 | 76 | RC30128G01600 | 71 | RC29669G00050 | 69 |
| P. trichocarpa | PT13G02220 | 76 | PT13G02220 | 70 | PT10G18860 | 69 |
| A. thaliana | AT3G05290 | 100 | AT5G27520 | 100 | AT2G39970 | 100 |
| A. lyrata | AL3G05130 | 98 | AL6G27740 | 99 | AL4G26590 | 90 |
| C. papaya | CP00994G00020 | 69 | CP00994G00020 | 68 | CP00091G00750 | 60 |
| V. vinifera | VV05G04420 | 68 | VV05G04420 | 64 | VV13G03870 | 69 |
| O. sativa | OS05G32630 | 69 | OS05G32630 | 67 | OS03G15860 | 65 |
| B. distachyon | BD2G26480 | 68 | BD2G26480 | 65 | BD1G67180 | 63 |
| S. bicolor | SB09G019430 | 68 | SB09G019430 | 68 | SB01G040130 | 63 |
| Z. mays | ZM08G13190 | 67 | ZM08G13190 | 66 | ZM08G15920 | 47 |
| S. moellendorffii | SM00005G05600 | 57 | SM00005G05600 | 59 | SM00006G03610 | 58 |
| P. patens | PP00086G00350 | 58 | PP00022G01420 | 55 | PP00090G00790 | 57 |
| O. lucimarinus | OL01G02450 | 39 | OL01G02450 | 37 | OL20G02530 | 39 |
| O. tauri | OT01G02440 | 35 | OT01G02440 | 33 | OT14G02730 | 37 |
| Micromonas. sp. RCC299 | MRCC299_16G02440 | 27 | MRCC299_16G02440 | 26 | MRCC299_13G00830 | 38 |
| V. carteri | VC00102G00130 | 27 | VC00102G00130 | 26 | VC00025G00570 | 42 |
| C. reinhardtii | No hit | – | No hit | 0 | CR07G08520 | 30 |
The table summarizes the information of the genes used for the distribution analysis of the MC-type transporters PNC1, PNC2, and PXN (Figure 4). Following information is listed: PLAZA gene identity (ID) number of the reciprocal best hit in the individual genome, relative identity of the genes to the Arabidopsis homolog. The pairwise normalized identities were calculated by dividing the number of identical positions by the length of the shorter protein. As a cut-off value we used a normalized sequence identity greater than 25%. In case for A. thaliana the best matches were the query sequences itself and have been highlighted in bold.