Table 3.

Top 20 most similar regulated genes in the group of five experiments.

Gene	StdDev	Function	bra	brc	hox	ERG	not	C+	C−
DDX50	0.048	RNA helicase	−0.15	−0.27	−0.15	−0.18	−0.14	1	1
USP2	0.058	Peptidase	0.27	0.38	0.22	0.35	0.29	1	26
NCAPD2	0.059	Protein binding	−0.22	−0.22	−0.14	−0.09	−0.08	21	3
DARC	0.067	Cytokine binding	0.18	0.27	0.15	0.33	0.21	4	46
CCR3	0.069	Cytokine binding	0.4	0.49	0.38	0.33	0.51	0	0
NUP37	0.07	Nuclear pore	−0.25	−0.14	−0.07	−0.21	−0.08	17	1
PSMG1	0.071	Chaperone	−0.2	−0.07	−0.19	−0.22	−0.04	17	6
IDI1	0.072	Isomerase	−0.16	−0.18	−0.19	−0.21	−0.01	1	6
LRIT1	0.072	Protein binding	0.22	0.17	0.29	0.39	0.28	0	1
NOL4	0.075	DNA binding	0.28	0.38	0.31	0.46	0.25	5	10
RPA2	0.075	DNA replication	−0.28	−0.12	−0.15	−0.06	−0.11	2	1
CHST1	0.076	Transferase	0.31	0.29	0.12	0.21	0.14	5	3
PCBP1	0.078	Translation regulator	−0.2	−0.1	−0.18	−0.25	−0.03	2	2
HAT1	0.079	Transferase	−0.17	−0.04	−0.18	−0.26	−0.07	18	1
ADNP2	0.079	Transcription regulator	−0.28	−0.1	−0.15	−0.04	−0.18	3	1
CD7	0.079	Receptor	0.29	0.19	0.14	0.36	0.28	2	8
DEK	0.08	Transcription regulator	−0.23	−0.08	−0.08	−0.25	−0.07	17	3
EED	0.081	Transferase	−0.26	−0.16	−0.2	−0.15	−0.02	1	2
KDR	0.081	Growth factor receptor	0.25	0.34	0.2	0.39	0.17	1	11
EDNRA	0.081	Peptide receptor	0.23	0.22	0.18	0.33	0.08	31	17

Notes: Values are log10 ratios between induced and control. C+/C−: number significant unique analyses of cancer tissue in the Oncomine database showing up/down-regulation in the 10% rank percentile, P-value below 1e-4 and fold-change above 2.0.

Abbreviations: StdDev, standard deviation; bra, BRAF+; brc, BRCA1−; hox, HOXA9−; ERG, ERG+; not, NOTCH1−.