Table 2. Field samples analyzed and corresponding variants identified by sequencing (gold standard) and by DGGE.
Sample | Sample Code | Variant Gold standard | Variant DGGE |
1 | GIM-13973 | HPR7b | HPR7b |
2 | GIM-13975 | HPR7b | HPR7b |
3 | GIM-13976 | HPR7b | HPR7b |
4 | GIM-HPR7b | HPR7b | HPR7b |
6 | GIM-13603 | HPR0 | HPR0 |
7 | GIM-11718 | HPR7b | HPR7b |
8 | GIM-13797 | HPR0 | HPR0 |
9 | GIM-14054 | HPR0 | HPR0 |
10 | GIM-14079 | HPR0 | HPR0 |
11 | GIM-14115 | HPR0 | HPR0 |
12 | GIM-13917 | HPR8 | HPR8 |
13 | GIM-13918 | HPR8 | HPR8 |
14 | GIM-13025 | HPR7b | HPR7b |
15 | GIM-13552 | HPR2 | HPR2 |
16 | GIM-13556 | HPR2 | HPR2 |
17 | GIM-HPR5 | HPR5 | HPR5 |
18 | GIM-13027 | HPR7b | HPR7b |
19 | GIM-13605 | HPR7b | HPR7b |
20 | GIM-13558 | HPR2 | HPR2 |
21 | GIM-13907 | HPR2 | HPR2 |
22 | GIM-13968 | HPR7b | HPR7b |
23 | GIM-13970 | HPR7b | HPR7b |
24 | GIM-13909 | HPR2 | HPR2 |
25 | GIM-14332 | HPR2 | HPR5 |
26 | GIM-14582 | HPR2 | HPR5 |