Table 2.

Genes with SNPs in selected regions of Chief chromosomes with functions related to milk production and disease resistance

				No. SNPs
Gene*	Chromosome	Start	End	Nonsynonymous	5′UTR	3′UTR
ITGA6	2	24966035	25051812	1	0	0
PLA2G2F	2	137036850	137050098	1	2	6
ARL4A	4	21573320	21574858	0	2	0
CSF2RB	5	81005400	81026598	1	0	0
SULT1E1	6	88173894	88229946	0	0	4
CXCL10†	6	94129095	94131447	0	0	3
SCARB2†	6	94258594	94341321	1	0	8
SAR1B	7	45321215	45352216	0	0	1
PLG†	9	100426314	100473934	1	0	0
CYP19A1	10	59440433	59504627	0	1	8
BMP4	10	68222238	68225971	0	0	0
MYD88	22	11727055	11731271	0	0	1

*Only best candidate genes are shown. For complete list of gene mutations in selected regions, see SI Appendix, Table S7.

^†These genes are located within intervals where allele frequencies differ in descendants and nondescendants of Chief (see SI Appendix, Table S8).