Table 2.
Type (k) |
Torsion Anglesa |
Nb |
Cα(i,i+3) distance [Å] |
H-bond (i←i+3 /(i→i+3)c [%] |
Energy (i←i+3)d [kcal/mol] |
|||||
---|---|---|---|---|---|---|---|---|---|---|
ϕi+1,k | ψi+1,k | ϕi+2,k | ψi+2,k | (ϕ+ψ)i+1,k | (ϕ+ψ)i+2,k | |||||
Ie | (−64) −65±12 |
(−27) −24±13 |
(−90) −93±16 |
(−7) −3±17 |
−89±14 | −95±19 | 34337 | 5.5±0.4 | 80/10 | −1.7±0.6 |
II | (−60) −61±13 |
(131) 136±11 |
(84) 80±16 |
(1) 5±20 |
75±14 | 85±11 | 15690 | 5.7±0.4 | 90/4 | −1.8±0.6 |
I’ | (55) 53±7 |
(38) 40±10 |
(78) 77±12 |
(6) 5±15 |
93±7 | 83±9 | 5238 | 5.4±0.3 | 95/84 | −1.8±0.5 |
II’ | (60) 60±9 |
(−126) −126±11 |
(−91) −93±13 |
(1) 5±16 |
−66±14 | −88±12 | 3522 | 5.5±0.4 | 95/64 | −2.0±0.6 |
VIII | (−72) −76±15 |
(−33) −32±14 |
(−123) −131±20 |
(121) 131±23 |
−108±16 | 0±25 | 14879 | 6.5±0.5 | 0.6/0.2 | −0.7±0.2 |
The average ϕ/ψ torsion angles of the two center residues (residues i+1 and i+2) of the isolated β-turns observed in the structure database (SI Fig. S1 D–H). The ideal ϕ/ψ torsion angles of the two center residues for five types β-turns (Hutchinson and Thornton 1994) are given in parentheses.
Number of isolated β-turns in the structure database, which are not overlapped with other β-turns.
Percentage of the isolated β-turns in the structure database with bb(i)←bb(i+3) and bb(i)→bb(i+3) H-bonds between the first and the last residue.
Electrostatic interaction energy (Kabsch and Sander 1983) of the bb(i)←bb(i+3) H-bond between the C=O of residue i and N-H of residue i+3 in all isolated β-turns in the structure database.
For type I turns, the sum of ψi+1 and ϕi+2 is also used in Eq 5, with a value of −118+20° degree (see Methods).