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. 2011 Jun;17(6):1120–1123. doi: 10.3201/eid1706.100038

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This is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.

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Nebovirus phylogenetic tree based on the deduced 549-aa–length sequences of the complete capsid. Possible novel strain is shown in boldface. Sequence alignments and clustering were performed by the unweighted-pair group method by using arithmetic average with Bionumerics software (Applied Maths, Sint-Martens-Latem, Belgium). Bootstrap values calculated with 1000 replicate trees are given at each node when >70%. Capsid sequences of the French nebovirus strains were submitted to the GenBank database under the following accession nos.: GU259542 (DijonA058/05/FR), FJ687386 (DijonA216/06/FR), GU259551 (DijonA290–2/07/FR), GU259553 (DijonA311–2/08/FR), GU259556 (DijonA364/08/FR), GU259561 (DijonA386/08/FR), and GU259569 (DijonA448/08/FR). GenBank accession nos. of Calicivirus reference strains used in this tree are: AY082890 (CV23-OH/00/US), AY549169 (CV519-OH/02/US), AY549170 (CV526-OH/02/US), AY549171 (CV531-OH/02/US), EF528561 (MA274/04/KOR), EF528564 (MA362/04/KOR), EF528569 (MA729/05/KOR), AY082891 (Nebraska/80/US), NC_007916 (Newbury1/76/UK), and AF097917 (Newbury2/76/UK). Underlined strain is an outgroup. Scale bar indicates the percentage of similarities between strains.