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. 2012 Apr 19;13(Suppl 6):S6. doi: 10.1186/1471-2105-13-S6-S6

Figure 3.

Figure 3

SVseq2 uses a semi-global alignment algorithm. The gaps "GTTCTAAGCC" and "GAATCACTTGGA" are without penalty. The gap at "TAC" and "T-C" are with penalty 3. The T-A mismatch are scored -1. Other Matches are scored 1 each. Total score is 23.