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. 2012 Apr 19;13(Suppl 6):S9. doi: 10.1186/1471-2105-13-S6-S9

Table 1.

Evaluation results on human data sets

Data set Program Complete Read Mapping Junction Read Mapping
exact relaxed exact relaxed
Human, 1% TopHat 93.85 93.85 72.18 80.73
ContextMap1 95.76 95.76 73.12 86.21
MapSplice 78.81 89.64 70.16 78.78
ContextMap2 95.97 95.98 73.07 86.05
Human, 2% TopHat 90.30 90.30 70.38 78.05
ContextMap1 95.51 95.52 71.53 83.78
MapSplice 53.92 81.45 58.73 68.14
ContextMap2 95.45 95.48 64.13 78.68

Accuracy of read mapping is reported for the two human data sets with 1% and 2% error rate, respectively. Here, ContextMap1 denotes the refinement of TopHat initial mappings by ContextMap, ContextMap2 the refinement of MapSplice initial mappings.