Table 2.

Evaluation results on mouse data sets

Data set	Program	Complete Read Mapping		Junction Read Mapping
		Exact	relaxed	exact	relaxed
Mouse, 1%	TopHat	94.43	94.43	80.10	86.21
	ContextMap1	97.03	97.05	82.95	91.62
	MapSplice	95.21	95.22	84.49	89.12
	ContextMap2	96.97	96.99	87.77	94.91
Mouse, 2%	TopHat	88.87	88.88	77.44	82.87
	ContextMap1	95.82	95.87	80.45	88.52
	MapSplice	92.89	92.89	77.89	81.95
	ContextMap2	96.31	96.36	82.87	90.57

Accuracy of read mapping is reported for the two mouse data sets with 1% and 2% error rate, respectively. Notation is the same as in Table 1.