Table 4.
Variations within genes related to transcription and translation processes
| Gene locus in NRRL 2338 | Length (amino acids) |
Gene (locus) | Variationa | Protein function and notes |
|---|---|---|---|---|
| SACE_2076 | 148 | nusB | Frameshift (-G 316) |
NusB antiterminator factor No paralogue. |
| Transcription factors | ||||
| SACE 0891 | 206 | Frameshift (+G 581/582) | TetR family transcriptional regulator | |
| SACE_1040 | 163 | Missense (R30C) | MarR family transcriptional regulator | |
| SACE_1895 | 281 | Frameshift (+C 603/604) | XRE family transcriptional regulator | |
| SACE_2927 | 918 | Missense (P52L) | SARP family transcriptional regulator | |
| SACE_3079 | 294 | Frameshift (-C 506) |
LysR family transcriptional regulator | |
| SACE_3348 | 96 | Missense (E60A) | XRE family transcriptional regulator | |
| SACE_4500 | 233 | Frameshift (-C 129; -G 222) |
GntR family transcriptional regulator | |
| SACE_4536 | 327 | Missense (T246N, L249M) | Lacl family transcription regulator | |
| SACE_4775 | 246 | Missense (A96V) | MerR family transcriptional regulator | |
| SACE_5410 | 287 | Missense (P140F) | XRE family transcriptional regulator | |
| SACE_5425 | 505 | Missense and in frame deletion (V297S, V298W, A299R, V300C, Q301R A302P, H303R, D304-, G305R) | PucR- family transcriptional regulator | |
| SACE_5448- SACE_5449 |
126 150 |
Duplication of SACE_5448 and SACE_5449 | SACE_5448: Unknown function SACE 5449: LuxR family transcriptional regulator | |
| SACE_5739 | 282 | Missense (K206T) | XRE family transcriptional regulator | |
| SACE_6021 | 484 | Frameshift (+A 1212/1213) | PucR- family transcriptional regulator | |
| Signal transduction | ||||
| SACE_1833 | 241 | Frameshift (-C 667) | Two-component system response regulator | |
| SACE_1879 | 587 | Frameshift (+C 1002/1003) | Serine/threonine protein kinase | |
| SACE_1988 | 150 | Missense (G125D) | Universal stress protein UspA | |
| SACE_2583 | 541 | Nonsense (R478*) | N-acyl D-amino acid deacylase | |
| SACE_4937 | 414 | Missense (G30R) | Mandelate racemase/starvation sensing protein | |
| SACE_5284 | 286 | staP | IPM | Endonuclease/Exonuclease/Phosphatase family protein |
| SACE_5286 | 224 | Frameshift (-G419, -G 430) | Two-component system response regulator | |
| SACE_5301 | 533 | Frameshift (+C 1585/1586) | N-acyl_D-amino acid deacylase | |
| SACE 6086 | 879 | kdpD | Missense (P828L) | Osmosensitive K+ channel histidine kinase |
| SACE_6447 | 228 | mtrA | In frame deletion (VI96-, HI97-) | Two-component system response regulator |
| SACE_6490 | 424 | Missense (S37R) |
Two-component system sensor kinase | |
| SACE_6720 | 526 | phoD | Missense (C328Y, P382F) | Phosphodiesterase/alkaline phosphatase D (phosphate starvation) |
| SACE_7263 | 382 | Missense (A222T) | Two-component system sensor kinase | |
| Translation machinery | ||||
| SACE_0443 | 464 | cysS | Missense (G198S) | Cysteinyl-tRNA synthetase |
| SACE_0799 | 593 | metS | Missense (P569S) | Methionyl-tRNA synthetase |
| SACE_2075 | 188 | efp | Frameshift (+C 504) | Elongation factor P |
| SACE_3403 | 474 | gatA | Missense (A243E) | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit |
| SACE_5926 | 1027 | infB | Missense (A278V) | Translation initiation factor 2 |
| SACE_5919 | 536 | Frameshift (-G 821) | Pseudouridine synthase | |
| Protein turnover and chaperones | ||||
| SACE_1339 | 860 | IPM | Aminopeptidase N | |
| SACE_2951 | 174 | clpC | Frameshift (+G 468/469) | ATPases with chaperone activity, ATP-binding subunit |
| SACE_3756 | 768 | clpA | Missense (I284T) | ATPases with chaperone activity, ATP-binding subunit |
| SACE_6784 | 610 | Frameshift (-C 1573) | Molecular chaperone | |
| SACE_6113 | 481 | IPM? | Aminopeptidase | |
aIPM, imperfect match