Table 1.
Correlation of mechanism-based candidate gene expression levels with birth weight
Gene Symbol | Transcript ID | HumanHT-12 v3 Expression vs. Birth Weight % (R2) |
Real Time RT-PCR Expression vs. Birth Weight % (R2) |
||
---|---|---|---|---|---|
Cord Blood (n = 48) |
Placenta (n = 48) |
Cord Blood | Placenta | ||
IGF1 | ILMN_2056087 | 2.0E-04 | 0.017 | nd | nd |
ILMN_1709613 | 0.003 | 0.002 | |||
IGF1R | ILMN_1675048 | 0.009 | 0.045 | nd | nd |
IGF2 | ILMN_1699867 | 1.3E-05 | 0.004 | 1.2E-04 (n = 190) | 4.5E-04 (n = 254) |
ILMN_2298035 | 0.008 | 0.001 | |||
ILMN_2413956 | 0.003 | 0.003 | |||
IGF2BP1 | ILMN_1733807 | 0.007 | 1.0E-04 | nd | nd |
IGF2BP2 | ILMN_1702447 | 0.003 | 0.016 | 0.022 (n = 119) | 1.0E-07 (n = 114) |
IGF2BP3 | ILMN_1807423 | 0.056 | 0.007 | nd | nd |
IGF2R | ILMN_1807662 | 0.006 | 3.0E-04 | 0.005 (n = 194) | 6.1E-04 (n = 241) |
IGFBP1 | ILMN_2387385 | 0.014 | 0.001 | ne | 0.052 (n = 150) |
ILMN_1728445 | 0.001 | 0.001 | |||
IGFBP2 | ILMN_1725193 | 0.006 | 0.031 | ne | 0.003 (n = 110) |
IGFBP3 | ILMN_1746085 | 0.007 | 0.002 | ne | 0.001 (n = 135) |
ILMN_2396875 | 0.009 | 0.002 | |||
IGFBP4 | ILMN_1665865 | 0.006 | 0.003 | nd | nd |
IGFBP5 | ILMN_2132982 | 0.014 | 0.002 | nd | nd |
ILMN_1750324 | 0.001 | 0.003 | |||
IGFBP6 | ILMN_1669362 | 0.001 | 0.009 | nd | nd |
IGFBP7 | ILMN_2062468 | 2.5E-05 | 0.005 | nd | nd |
INS | ILMN_1666966 | 0.022 | 0.034 | nd | nd |
INSR | ILMN_1670918 | 0.058 | 0.031 | nd | nd |
INSRR | ILMN_1715374 | 0.007 | 3.9E-05 | nd | nd |
PHLDA2 | ILMN_1671557 | 0.036 | 0.001 | nd | nd |
PLAGL1 | ILMN_1815121 | 0.001 | 0.009 | 0.006 (n = 105) | 0.013 (n = 136) |
ILMN_2356955 | 0.014 | 0.004 | |||
IGF2/IGF2R* | n/a | n/a | 0.002 (n = 186) | 0.002 (n = 241) |
Multiple entries represent data for multiple transcripts on the array. The best correlation obtained in each group is shown in bold
* Ratio IGF2/IGF2R expression
n/a = not applicable
nd = not done
ne = not expressed