Table 1. Results of the site-wise log-likelihoods generated under possible associations of species in base edges. The first column gives the possible associations for which the site-wise log-likelihoods were produced. Columns show the support values for the approximately unbiased (AU) test, the observed log-likelihood differences of the edges (OBS), Bootstrap probability tests (NP, BP; and PP), Kishino-Hasegawa (KH) test, Shimodaira-Hasegawa (SH) test, weighted Kishino-Hasegawa (WKH) test, and the weighted Shimodaira-Hasegawa (WSH) test.
| Possible associations | AU | OBS | NP | BP | PP | KH | SH | WKH | WSH |
|---|---|---|---|---|---|---|---|---|---|
| (4.2, DM) | 0,983 | −106,9 | 0,992 | 0,993 | 1,000 | 0,966 | 0,992 | 0,974 | 0,989 |
| (1, 4, DM) | 0,983 | −106,9 | 0,992 | 0,993 | 1,000 | 0,966 | 0,992 | 0,974 | 0,989 |
| (1, 2, 4, DM) | 0,983 | −106,9 | 0,992 | 0,993 | 1,000 | 0,966 | 0,992 | 0,974 | 0,989 |
| (4, DM) | 0,979 | −39,4 | 0,985 | 0,985 | 1,000 | 0,901 | 0,988 | 0,94 | 0,996 |
| (1c,1b) | 0,882 | −32,7 | 0,981 | 0,981 | 1,000 | 0,860 | 0,925 | 0,925 | 0,925 |
| (3, 6) | 0,713 | −28,2 | 0,918 | 0,919 | 1,000 | 0,753 | 0,753 | 0,753 | 0,753 |
| (1–8, 9.1, DM) | 0,679 | −14,1 | 0,648 | 0,646 | 1,000 | 0,721 | 0,909 | 0,666 | 0,916 |
| (1–4, 6, DM) | 0,670 | −5,6 | 0,47 | 0,467 | 0,997 | 0,592 | 0,967 | 0,592 | 0,967 |
| (2b, 2.2) | 0,644 | −5,1 | 0,407 | 0,399 | 0,973 | 0,593 | 0,911 | 0,593 | 0,927 |
| (5, 7) | 0,617 | −14,7 | 0,741 | 0,742 | 1,000 | 0,653 | 0,807 | 0,653 | 0,831 |
| (1, 2, 4, 5, 7, DM) | 0,555 | 5,6 | 0,104 | 0,103 | 0,002 | 0,408 | 0,949 | 0,408 | 0,951 |
| (1, 2, 4, 5, DM) | 0,440 | 14,7 | 0,251 | 0,252 | 0,000 | 0,347 | 0,815 | 0,347 | 0,806 |
| (1–6, DM) | 0,383 | 14,7 | 0,259 | 0,258 | 0,000 | 0,347 | 0,678 | 0,347 | 0,676 |
| (2.1, 2b) | 0,356 | 5,1 | 0,593 | 0,601 | 0,027 | 0,407 | 0,585 | 0,407 | 0,569 |
| (9.1,9.2) | 0,321 | 14,1 | 0,352 | 0,354 | 0,000 | 0,279 | 0,678 | 0,334 | 0,668 |
| (3,5–7) | 0,302 | 5,8 | 0,093 | 0,091 | 0,000 | 0,232 | 0,911 | 0,232 | 0,821 |
| (1–5, 7, DM) | 0,287 | 28,2 | 0,082 | 0,081 | 0,000 | 0,247 | 0,636 | 0,247 | 0,645 |
| (1–4, DM) | 0,287 | 28,2 | 0,082 | 0,081 | 0,000 | 0,247 | 0,636 | 0,247 | 0,645 |
| (1b,1.1) | 0,118 | 32,7 | 0,019 | 0,019 | 0,000 | 0,140 | 0,596 | 0,075 | 0,330 |
| (3, 6, DM) | 0,022 | 106,9 | 0,007 | 0,006 | 0,000 | 0,034 | 0,093 | 0,015 | 0,065 |
| (1, 4.1) | 0,021 | 39,4 | 0,015 | 0,015 | 0,000 | 0,099 | 0,406 | 0,031 | 0,156 |
| (1, 4) | 0,017 | 106,9 | 0,008 | 0,007 | 0,000 | 0,034 | 0,093 | 0,015 | 0,051 |
| (1, 2, 4, 5) | 0,017 | 106,9 | 0,008 | 0,007 | 0,000 | 0,034 | 0,093 | 0,015 | 0,051 |
| (1, 2, 4) | 0,017 | 106,9 | 0,008 | 0,007 | 0,000 | 0,034 | 0,093 | 0,015 | 0,051 |
The following species were randomly chosen as representatives for the corresponding clades and subclades in the statistical analysis – 1c, Phytophthora cactorum ; 1b, P. nicotianae; 1c, P. iranica; 1.1, P. infestans; 2ab, P. capsici; 2.1, P. bisheria; 2.2, P. multivesiculata; 3, P. nemorosa; 4.1, P. quercina; 4.2, P. palmivora; 5, P. katsurae; 6, P. humicola; 7, P. europaea; 8, P. ramorum; 9.1, P. polonica; 9.2, P. captiosa; 10, P. boehmeriae; DM, Pseudoperonospora cubensis.