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. 2012 May 31;3:168. doi: 10.3389/fmicb.2012.00168

Table 3.

Reference key to archaeal clade nomenclature in Figures 3–6.

Figure 3 Figure 4 Figure 5 Figure 6
BC07-2A-27 DeSantis et al. (2006) 19c-33 SILVA 106 1E11 *Novel 1.1 Ochsenreiter et al. (2003)
DHVE-3 Takai and Horikoshi (1999) 4G12 *Novel 113A77 *Novel 1.2 Ochsenreiter et al. (2003)
DHVE-5 Takai and Horikoshi (1999) ANME-1 Hinrichs et al. (1999) 20c-4 SILVA 106 1.3 Ochsenreiter et al. (2003)
DHVE-6 Takai and Horikoshi (1999) ANME-1a Teske et al. (2002) 27M5 DeSantis et al. (2006) 1.1a Ochsenreiter et al. (2003)
DHVE-8 Nercessian et al. (2003) ANME-1b Teske et al. (2002) A-Plasma Dick et al. (2009) 1.1b Ochsenreiter et al. (2003)
DSEG Takai et al. (2001) ANME-2C Orphan et al. (2001) A10 SILVA 106 1.1c Ochsenreiter et al. (2003)
DSEG-2 *Durbin and Teske (2011) ANME-3 Knittel et al. (2005) ACSAS2P1C4 *Novel A13 DeSantis et al. (2006)
DSEG-3 *Durbin and Teske (2011) ANME-2a/2b Orphan et al. (2001) ACSAs2P1H2 *Novel A14 DeSantis et al. (2006)
DSEG-4 *Durbin and Teske (2011) BS-K-E9 SILVA 106 ArcG08 *Novel AK31 SILVA 106
Eury4 Robertson et al. (2009) E1/2 Group Cadillo-Quiroz et al. (2006) ARCp1-30 *Novel Aloha Group Pester et al. (2011)
Eury4AA Robertson et al. (2009) GoM_ArcI SILVA 106 DHVE-2 Takai and Horikoshi (1999) B10 McDonald et al. (2011)
Eury4AB Robertson et al. (2009) GoM161_Arch13 DeSantis et al. (2006) DHVE-9 Pagé et al. (2004) C1 Hugenholtz (2002)
Eury5 Robertson et al. (2009) HA1-57 SILVA 106 DSHVEG Takai et al. (2001) C1a Hugenholtz (2002)
Eury5c Robertson et al. (2009) HydBeg134 DeSantis et al. (2006) E-Plasma Dick et al. (2009) C1b Hugenholtz (2002)
Eury5D Robertson et al. (2009) Kazan-3A-21 SILVA 106 GN_4n1 group A Jahnke et al. (2008) C1c Hugenholtz (2002)
Eury5E Robertson et al. (2009) Kua13 DeSantis et al. (2006) GoC_Arc61* *Novel C21 Hugenholtz (2002)
Eury5H Robertson et al. (2009) MBG-E Vetriani et al. (1999) GoM_Arch10 *Novel C22 DeSantis et al. (2006)
Eury5I/B Robertson et al. (2009) MG-IV López-Garcia et al. (2001) Halophilic cluster 2 Jahnke et al. (2008) C3 Hales et al. (1996)
Eury5J Robertson et al. (2009) MidArch4 SILVA 106 HO28S9A17 SILVA 106 C3 Hugenholtz (2002)
Eury5K Robertson et al. (2009) MSBL1 Van der Wielen et al. (2005) HQSAT_10G2 *Novel D_F10 SILVA 106
Eury5L Robertson et al. (2009) NO27FW DeSantis et al. (2006) HydGC-83 *Novel DHVA1 Takai and Horikoshi (1999)
Eury5L Robertson et al. (2009) pISA16 DeSantis et al. (2006) I-Plasma Dick et al. (2009) DSAG Takai et al. (2001)
Eury5M Robertson et al. (2009) pMC1 Hugenholtz (2002) KM07 *Novel FCG2 Hugenholtz (2002)
Eury5N Robertson et al. (2009) pMC1 DeSantis et al. (2006) MBG-D Vetriani et al. (1999) FCG3 Hugenholtz (2002)
Eury5O Robertson et al. (2009) R10 Group Hales et al. (1996) MG-II Fuhrman et al. (1992) Fhm5A01 *Novel
Eury5P Robertson et al. (2009) RC-I Groβkopf et al. (1998b) MG-III Fuhrman and Davis (1997) FnvA51 DeSantis et al. (2006)
Eury5Q Robertson et al. (2009) RC-II Groβkopf et al. (1998b) MG-V *Durbin and Teske (2011) FnvA65 DeSantis et al. (2006)
Eury5R Robertson et al. (2009) SAGMEG Takai et al. (2001) MKCST-A3 SILVA 106 FSC Group Takai et al. (2001)
Eury5S Robertson et al. (2009) SAGMEG-Affiliated *Novel Mut13-3d *Novel GBS_L2_E12 DeSantis et al. (2006)
Eury6 Robertson et al. (2009) Methanomicrobia *Durbin and Teske (2011) NRA8 *Novel GoC_Arc109 SILVA 106
Eury6U Robertson et al. (2009) WSA Hugenholtz (2002) OUTa1 *Novel HWCG-I Nunoura et al. (2005)
Eury6V/X/W/Z Robertson et al. (2009) SAGMA-S/T Schleper et al. (2005) HWCG-III Nunoura et al. (2005)
HDBW-WA22 *Novel SAT_3D8 *Novel MBG-A Vetriani et al. (1999)
HF-1 DeSantis et al. (2006) SBAK-shallow-09 *Novel MBG-A Affiliated *Novel
HydGC-84-221A McDonald et al. (2011) SITS412 *Novel MBG-B Vetriani et al. (1999)
MSP41 *Novel vadinCA11 DeSantis et al. (2006) MBG-C Vetriani et al. (1999)
Nanohaloarchaea Narasingarao et al. (2012)
PENDANT-33 Schleper et al. (2005) vadinCA11 SILVA 106 MCG-1 Inagaki et al. (2003)
pISA35 *Novel WCHD3-02 DeSantis et al. (2006) MCG2 Inagaki et al. (2006)
pMC2A384 McDonald et al. (2011) WCHD3-16 *Novel MCG-1 Teske and Sørensen (2008)
SA2 Eder et al. (2002) MCG-3 Teske and Sørensen (2008)
Sediment Archaea-1 group 1 Hugenholtz (2002) MCG-4 Teske and Sørensen (2008)
Sediment Archaea-1 group 2 Hugenholtz (2002) MG-I DeLong (1992)
SM1K20 SILVA 106 MG-I Fuhrman et al. (1992)
VAL II Jurgens et al., 2000 MHVG-2 Takai et al. (2001)
VALIII Jurgens et al., 2000 MHVG-3 Takai et al. (2001)
WCHD3-30 DeSantis et al. (2006) NRP-J DeSantis et al. (2006)
YS18As93 *Novel NT-A3 Reed et al. (2002)
NT-A4 Reed et al. (2002)
OPA1 Hugenholtz (2002)
OPA2 Hugenholtz (2002)
OPA3 Hugenholtz (2002)
OPA4 Hugenholtz (2002)
OPPD003 SILVA 106
Papm43 SILVA 106
pISA7 DeSantis et al. (2006)
pISA9 DeSantis et al. (2006)
pMC2A209 SILVA 106
pOWA133 DeSantis et al. (2006)
pSL12 SILVA 106
pSL17 *Novel
pSL22 DeSantis et al. (2006)
pSL4 DeSantis et al. (2006)
pUWA2 DeSantis et al. (2006)
SAGMA-X DeSantis et al. (2006)
SAGMCG Takai et al. (2001)
SBAK-mid-08 *Novel
SBAK-mid-13 DeSantis et al. (2006)
SCG Takai et al. (2001)
Sd-NA DeSantis et al. (2006)
YNPFFA4/YNPFFA108 DeSantis et al. (2006)

The GreenGene nomenclature (DeSantis et al., 2006) is derived from the November 2008 GreenGenes version (see Methods); some clades are based on the 2011 version (McDonald et al., 2011).