Table 5.
SNP | Seattle SNP annotation | Carlson coefficient (±SE) | Carlson t-Statistic b | Carlson P c | Current coefficient (±SE)d | Current t-Statistic b | Current P c |
---|---|---|---|---|---|---|---|
rs854566e | PON16842 | −10.6 (±4.3) | −2.480 | 0.014 | −20.4 (±4.68) | −4.353 | 1.64 × 10 − 5 |
rs3917510 | PON112471 | 16.6 (±6.9) | 2.424 | 0.016 | 14.3 (±6.48) | 2.208 | 0.028 |
rs2269829 | PON119470 | −16.5 (±10.8) | −1.520 | 0.129 | 13.6 (±21.82) | 0.625 | 0.533 |
rs3917564 | PON123887 | −39.0 (±18.1) | −2.153 | 0.032 | 15.0 (±26.67) | 0.564 | 0.573 |
rs854549 | PON129021 | 9.2 (±4.5) | 2.051 | 0.041 | −1.3 (±4.90) | −0.260 | 0.795 |
rs854572 | PON1895 | 13.0 (±4.9) | 2.677 | 0.008 | −0.28 (±4.97) | −0.056 | 0.955 |
SE = standard error.
aCarlson et al. study n = 500 European male subjects [27].
b t-Statistics and P-values were calculated from the coefficients from each subgroup (Carlson n = 500, current study n = 523) and standard errors within the best-fit multivariate model by the glm function in R.
cBoth Carlson and current study utilized a linear regression model adjusting for age, current smoking status, and the four functional PON1 SNPs.
dCurrent study subset of 523 European male subjects not considered by Carlson et al.
eRepresented by proxy SNP, rs854457, with LD r 2 = 0.93 in the current study.