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. 2012 Mar 8;13:38. doi: 10.1186/1471-2105-13-38

Table 1.

Summary of the results for LTE.

Experiment: LTE. A2, NO. (2 sources)
Random K-means FCM PCA FastICA NMF (als)

euc A2: 0.98 A2: 0.97 A2: 0.98 A2: 0.91 A2: 0.98 A2: 0.97
NO: 0.96 NO: 0.99 NO: 0.99 NO: 0.98 NO: 0.87 NO: 0.95

als A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97
NO: 0.98 NO: 1.00 NO: 1.00 NO: 1.00 NO: 0.95 NO: 0.96

alspg A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97
NO: 0.96 NO: 1.00 NO: 1.00 NO: 1.00 NO: 0.95 NO: 0.96

alsobs A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97 A2: 0.97
NO: 0.96 NO: 1.00 NO: 1.00 NO: 1.00 NO: 0.95 NO: 0.99

convex A2: 1.00 A2: 1.00 A2: 1.00 A2: 0.99 A2: 1.00 A2: 1.00
NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00

Experiment: LTE. A2, ME, NO. (3 sources)

Random K-means FCM PCA FastICA NMF (als)

euc A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.88 A2: 0.94 A2: 0.94
ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.78 ME: 0.86 ME: 0.85
NO: 0.95 NO: 1.00 NO: 0.99 NO: 0.90 NO: 0.92 NO: 0.93

als A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94
ME: 0.85 ME: 0.84 ME: 0.84 ME: 0.85 ME: 0.85 ME: 0.85
NO: 0.92 NO: 0.99 NO: 0.99 NO: 0.92 NO: 0.91 NO: 0.91

alspg A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94
ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.85
NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.95 NO: 0.93 NO: 0.92

alsobs A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94 A2: 0.94
ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.85 ME: 0.85
NO: 0.96 NO: 0.99 NO: 0.99 NO: 0.95 NO: 0.95 NO: 0.95

convex A2: 0.99 A2: 0.99 A2: 0.98 A2: 0.98 A2: 0.98 A2: 0.98
ME: 0.88 ME: 0.88 ME: 0.90 ME: 0.86 ME: 0.87 ME: 0.87
NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00

Experiment: LTE. A2, GL, NO. (3 sources)

Random K-means FCM PCA FastICA NMF (als)

euc A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.87 A2: 0.92 A2: 0.91
GL: 0.75 GL: 0.76 GL: 0.75 GL: 0.92 GL: 0.78 GL: 0.76
NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.96 NO: 0.94 NO: 0.99

als A2: 0.92 A2: 0.92 A2: 0.92 A2: 0.92 A2: 0.92 A2: 0.92
GL: 0.76 GL: 0.76 GL: 0.76 GL: 0.76 GL: 0.76 GL: 0.76
NO: 0.95 NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.95 NO: 0.98

alspg A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.91
GL: 0.75 GL: 0.75 GL: 0.75 GL: 0.75 GL: 0.75 GL: 0.75
NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.97 NO: 0.96

alsobs A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.91 A2: 0.91
GL: 0.75 GL: 0.75 GL: 0.75 GL: 0.75 GL: 0.75 GL: 0.75
NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.99 NO: 0.98 NO: 0.99

convex A2: 0.94 A2: 0.97 A2: 0.95 A2: 0.94 A2: 0.96 A2: 0.96
GL: 0.80 GL: 0.73 GL: 0.77 GL: 0.81 GL: 0.75 GL: 0.74
NO: 0.98 NO: 1.00 NO: 1.00 NO: 0.99 NO: 1.00 NO: 1.00

Experiment: LTE. A2, MM, NO. (3 sources)

Random K-means FCM PCA FastICA NMF (als)

euc A2: 0.96 A2: 0.88 A2: 0.89 A2: 0.97 A2: 0.88 A2: 0.88
MM: 0.92 MM: 0.97 MM: 0.97 MM: 0.91 MM: 0.99 MM: 0.97
NO: 0.95 NO: 0.98 NO: 0.98 NO: 0.72 NO: 0.89 NO: 0.98

als A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88
MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.97
NO: 0.98 NO: 0.97 NO: 0.97 NO: 0.98 NO: 0.97 NO: 0.98

alspg A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88
MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.97
NO: 0.97 NO: 0.98 NO: 0.98 NO: 0.98 NO: 0.96 NO: 0.98

alsobs A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88 A2: 0.88
MM: 0.98 MM: 0.98 MM: 0.97 MM: 0.97 MM: 0.97 MM: 0.98
NO: 0.98 NO: 0.98 NO: 0.98 NO: 0.98 NO: 0.97 NO: 0.98

convex A2: 0.98 A2: 0.99 A2: 0.98 A2: 0.98 A2: 0.99 A2: 0.88
MM: 1.00 MM: 0.99 MM: 0.99 MM: 0.99 MM: 1.00 MM: 0.98
NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00 NO: 1.00 NO: 0.99

Summary of the correlation values for the sources most highly correlating with each type of tissue as expressed by its mean spectrum, for different diagnostic problems at LTE, and for all the NMF methods and initialisation conditions in the study. The diagnostic problems are: A2, NO; A2, ME, NO; A2, GL, NO; and A2, MM, NO