Table 2.
Spota | Protein Identification | NCBI Accession # | Potential recognition motifs (SnRK2)b | Sc | T/Wd |
---|---|---|---|---|---|
5 | Elongation factor Tu | gi|21685576 | RRILS, RGIT | U | I |
27 | Aspartate-semialdehyde dehydrogenase | gi|113549818 | RRPSS, FLRVIS | U | U |
61 | Fructose-bisphosphate aldolase | gi|790970 | RFAS | D | D |
67 | Aspartate aminotransferase | gi|29468084 | RVAT, RVKS | U | U |
68 | Putative isovaleryl-CoA dehydrogenase | gi|113578072 | RRLYS, LVRHGS | U | U |
69 | Putative acetyl-CoA C-acetyltransferase | gi|113630918 | RSSS, RKGS | U | U |
76 | Dihydrolipoamide dehydrogenase precursor | gi|113532449 | RLGS, RFMT | U | I |
77 | Transketolase | gi|227468492 | RNLS, RVVS | U | U |
79 | Simillar to enolase | gi|115478881 | RAAT, RNQS, RMGS | U | U |
82, 227 | Putative inorganic pyrophosphatase | gi|113537770 | RRRCSLRTNS, RKVS | D | D |
112 | Glutathione S-transferase | gi|31433227 | Not found | U | D |
112 | Proteasome subunit beta type 2 | gi|17380213 | RRAYT | U | D |
112 | Putative chaperonin21 precursor | gi|51090748 | RVCS, RRPS | U | D |
116 | Triose phosphate isomerise | gi|553107 | Not found | U | U |
124 | Formate dehydrogenase, mitochondrial precursor | gi|21263611 | Not found | U | U |
125 | Glutathione S-transferase II | gi|3746581 | MARPSS | U | U |
134 | Oryzacystatin | gi|1280613 | Not found | D | D |
134, 214, 227 | 15 kda organ-specific salt-induced protein | gi|256638 | FGRSGT | D | D |
160 | Ascorbate peroxidise | gi|1321661 | Not found | D | D |
200 | Peroxidase | gi|257657027 | IDRAKS, RNDS | U | U |
200 | Glutamine synthetase | gi|124052115 | RTLS, RRLT, RHET, RGAS, RPAS | U | U |
202, 265 | Putative glyoxalase II | gi|113533338 | RARPIS | U | U |
206 | Glyoxalase I | gi|113623141 | IQRGPT | U | U |
213 | Thioredoxin type H | gi|82407383 | Not found | U | U |
225 | Calreticulin | gi|6682833 | RARSSS | D | D |
258 | Putative enoyl-ACP reductase | gi|113623526 | IGRALS, RAMS, RVNT | U | U |
259 | Methylmalonate semi-aldehyde dehydrogenase | gi|113610618 | LLRSGS, RVQS, RDAT, VKRASS | D | D |
275,277 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | gi|257353836 | RSET, VKRNKS | U | U |
276, 278 | DnaK-type molecular chaperone precursor | gi|257307253 | FARTFS, RQAT, INRNTT | U | U |
292, 293 | Phosphoglyceromutase | gi|257353838 | RIAS, RAET, VKRNKS | U | U |
314 | Glutamate dehydrogenase | gi|33242905 | LTRVFT | U | U |
314 | Aspartate aminotransferase | gi|215768565 | RLPT | U | U |
315, 318 | Glyceralde-3-phosphate dehydrogenase | gi|968996 | RAAS, RVPT | U | U |
385, 67 | Phosphoglycerate_kinase | gi|113596357 | Not found | U | U |
383 | Translation initiation factor 5A | gi|113611710 | RLPT | U | I |
386 | Pathogen-related protein | gi|16589076 | Not found | U | U |
390 | Aldehyde dehydrogenase | gi|8163730 | RRGSS, LQRFST, RVGT | U | U |
392 | Hypothetical protein | gi|14192878 | VLRLRS, RYAT | U | U |
aSpot numbers correspond to the spots in Figure 2
bPotential phosphorylation motifs for SnRK2 kinase, RXX(S/T) were analyzed. Motifs with favouring amino acids (L, I, V, M, F, R) at -5 position for CDPK/SnRK2 were marked as bold characters according to Vlad et al. (2008). Among these, the highly preferred motifs, (L/I)XRXX(S/T) were underlined
cUp (U) or down (D)-regulated protein spots in wild type rice roots after NaCl treatment for 3 h or 7 h
dUp (U) or down (D)-regulated or induced (I) protein spots in OSRK1 transgenic rice roots compared to wild type roots at 3 h or 7 h control