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. 2012 Mar 31;10:25. doi: 10.1186/1477-5956-10-25

Table 2.

The potential SnRK2 phosphorylation sites found in protein spots showing more than 1.5 fold change in OSRK1 transgenic rice roots at unstressed condition

Spota Protein Identification NCBI Accession # Potential recognition motifs (SnRK2)b Sc T/Wd
5 Elongation factor Tu gi|21685576 RRILS, RGIT U I
27 Aspartate-semialdehyde dehydrogenase gi|113549818 RRPSS, FLRVIS U U
61 Fructose-bisphosphate aldolase gi|790970 RFAS D D
67 Aspartate aminotransferase gi|29468084 RVAT, RVKS U U
68 Putative isovaleryl-CoA dehydrogenase gi|113578072 RRLYS, LVRHGS U U
69 Putative acetyl-CoA C-acetyltransferase gi|113630918 RSSS, RKGS U U
76 Dihydrolipoamide dehydrogenase precursor gi|113532449 RLGS, RFMT U I
77 Transketolase gi|227468492 RNLS, RVVS U U
79 Simillar to enolase gi|115478881 RAAT, RNQS, RMGS U U
82, 227 Putative inorganic pyrophosphatase gi|113537770 RRRCSLRTNS, RKVS D D
112 Glutathione S-transferase gi|31433227 Not found U D
112 Proteasome subunit beta type 2 gi|17380213 RRAYT U D
112 Putative chaperonin21 precursor gi|51090748 RVCS, RRPS U D
116 Triose phosphate isomerise gi|553107 Not found U U
124 Formate dehydrogenase, mitochondrial precursor gi|21263611 Not found U U
125 Glutathione S-transferase II gi|3746581 MARPSS U U
134 Oryzacystatin gi|1280613 Not found D D
134, 214, 227 15 kda organ-specific salt-induced protein gi|256638 FGRSGT D D
160 Ascorbate peroxidise gi|1321661 Not found D D
200 Peroxidase gi|257657027 IDRAKS, RNDS U U
200 Glutamine synthetase gi|124052115 RTLS, RRLT, RHET, RGAS, RPAS U U
202, 265 Putative glyoxalase II gi|113533338 RARPIS U U
206 Glyoxalase I gi|113623141 IQRGPT U U
213 Thioredoxin type H gi|82407383 Not found U U
225 Calreticulin gi|6682833 RARSSS D D
258 Putative enoyl-ACP reductase gi|113623526 IGRALS, RAMS, RVNT U U
259 Methylmalonate semi-aldehyde dehydrogenase gi|113610618 LLRSGS, RVQS, RDAT, VKRASS D D
275,277 2,3-bisphosphoglycerate-independent phosphoglycerate mutase gi|257353836 RSET, VKRNKS U U
276, 278 DnaK-type molecular chaperone precursor gi|257307253 FARTFS, RQAT, INRNTT U U
292, 293 Phosphoglyceromutase gi|257353838 RIAS, RAET, VKRNKS U U
314 Glutamate dehydrogenase gi|33242905 LTRVFT U U
314 Aspartate aminotransferase gi|215768565 RLPT U U
315, 318 Glyceralde-3-phosphate dehydrogenase gi|968996 RAAS, RVPT U U
385, 67 Phosphoglycerate_kinase gi|113596357 Not found U U
383 Translation initiation factor 5A gi|113611710 RLPT U I
386 Pathogen-related protein gi|16589076 Not found U U
390 Aldehyde dehydrogenase gi|8163730 RRGSS, LQRFST, RVGT U U
392 Hypothetical protein gi|14192878 VLRLRS, RYAT U U

aSpot numbers correspond to the spots in Figure 2

bPotential phosphorylation motifs for SnRK2 kinase, RXX(S/T) were analyzed. Motifs with favouring amino acids (L, I, V, M, F, R) at -5 position for CDPK/SnRK2 were marked as bold characters according to Vlad et al. (2008). Among these, the highly preferred motifs, (L/I)XRXX(S/T) were underlined

cUp (U) or down (D)-regulated protein spots in wild type rice roots after NaCl treatment for 3 h or 7 h

dUp (U) or down (D)-regulated or induced (I) protein spots in OSRK1 transgenic rice roots compared to wild type roots at 3 h or 7 h control