Table 1. Summary of all correlations performed in these experiments.

	Direction	Relative Kolmogorov-Smirnov p–value	Relative ECDF area correlation	Relative ECDF deviation area p–value
					C	F
Human transcription start sites (T) versus NF-kappa-B sites (N)	T→N	2e−07	0.015	<0.001	√
	N→T	0.13	0.012	0.072	√
L1 elements(T) versus Splice Sites (S)	T→S	∼0*	−0.03	<0.001		√
	S→T	∼0	−0.16	<0.001		√
Promoter sites (P) versus Promoter plus spikein (S)	P→S	∼0	0.25	<0.001	√
	S→P	∼0	0.25	<0.001	√
H3K4me3 histones (H) versus Promoters of actively transcribed genes (P)	H→P	∼0	0.22	<0.001	√
	P→H	∼0	0.02	<0.001	√
CpG Islands (I) versus Coding sequences (C)	I→C	∼0	−0.195	<0.001		√
	C→I	∼0	−0.012	<0.001		√

*: ∼0 means that the default R precision for KS test p-value is not enough to distinguish the value from 0.