Table 2. The GIs determined by DNA microarrays and their functional classification.
| B. pseudomallei isolates | ||||||
| GIs | Soil | Clinical | Function classification* | |||
| BP45s | BP28L | H307 | P54 | P82 | ||
| 2 | − | − | − | − | − | Cellular processes, Regulatory, Cell envelope, DNA metabolism, |
| Transcription | ||||||
| 3 | − | − | − | − | − | Regulatory, Cell envelope, DNA metabolism, Protein fate, Energy |
| metabolism | ||||||
| 4 | − | − | − | − | − | Cellular processes/ Energy metabolism, Regulatory, DNA |
| metabolism | ||||||
| 5 | − | − | − | − | − | DNA metabolism, Transport and binding protein |
| 6 | − | − | − | + | + | Cell envelope, Energy metabolism/protein synthesis/regulatory |
| 8.1 | − | − | + | + | + | Energy metabolism, Regulatory, Central metabolism, Cell |
| envelope, Transport and binding protein | ||||||
| 8.2 | − | − | + | + | + | DNA metabolism, Regulatory, Cellular processes, Fatty acid |
| 10 | − | + | − | − | − | DNA metabolism, Regulatory |
| 11 | − | − | − | − | − | DNA metabolism |
| 12 | − | − | + | − | − | Cellular protein, Protein fate |
| 16b | − | − | − | − | − | Cell envelope, Regulatory, Transport and binding protein |
| 13 | − | − | − | − | − | DNA metabolism, Regulatory, Transcription |
| 15 | − | − | + | + | + | Cellular processes/biosynthesis, Regulatory, Cell envelope, DNA |
| metabolism, Transcription, Energy metabolism | ||||||
| 16 | − | − | − | − | − | Cellular process/protein fate, Energy metabolism/AA biosynthesis, |
| Regulatory, Central metabolism, Transcription, Transport and binding protein | ||||||
| 16c | − | − | + | − | − | Biosynthesis/transport, Transport protein |
GIs present (+) and absent (−).
*
Functional classification data obtained by Burkholderia pseudomallei K96243 genome annotation from Pathema Bioinformatics Resource Center [28].