Table A1. Influenza Sequence Database accession numbers of influenza virus genes analyzed*.
| Influenza strain | Clade | Hemagglutinin | Neuraminidase | M |
|---|---|---|---|---|
| A/Vietnam/HN30408/05 | 1 | ISDN119678 | ISDN119679 | NA† |
| A/Vietnam/JP14/05 | 1 | ISDN117778 | ISDN117783 | NA |
| A/Vietnam/JPHN30321/05 | 1 | ISDN118371 | NA | NA |
| A/Vietnam/JP4207/05 | 1 | ISDN117777 | ISDN117782 | NA |
| A/Cambodia/JP52a/2005 | 1 | ISDN121986 | ISDN122818 | NA |
| A/Chicken/Cambodia/013LC1b/2005 | 1 | ISDN122143 | ISDN122148 | NA |
| A/Chicken/Cambodia/013LC2b/2005 | 1 | NA | ISDN122151 | NA |
| A/Chicken/Cambodia/022LC3b/2005 | 1 | ISDN122146 | ISDN122152 | NA |
| A/Goose/Cambodia/022b/2005 | 1 | ISDN122147 | ISDN122153 | NA |
| A/Vietnam/JP178/04 | 1 | ISDN69608 | ISDN69610 | AF255363 |
| A/Vietnam/1194/2004 | 1 | ISDN38686 | ISDN38703 | ISDN39957 |
| A/Vietnam/1203/2004 | 1 | ISDN38687 | ISDN38704 | ISDN39958 |
| A/Thailand/16/2004 | 1 | ISDN40341 | ISDN48790 | ISDN45755 |
| A/Vietnam/3062/2004 | 1 | AY651336 | AY651448 | NA |
| A/Vietnam/3212/2004 | 1 | ISDN40278 | NA | NA |
| A/Thailand/Suphanburi/83/2004 | 1 | ISDN40917 | ISDN48792 | ISDN111182 |
| A/Thailand/Kan353/2004 | 1 | ISDN40918 | ISDN48791 | 1SDN111183 |
| A/Thailand/Chaiyaphum/622/2004 | 1 | ISDN49460 | ISDN48793 | ISDN111184 |
| A/Chicken/Thailand/2/2004 | 1 | ISDN49021 | ISDN49267 | ISDN49264 |
| A/Prachinburi/6231/2004 | 1 | ISDN110940 | ISDN110939 | ISDN111185 |
| A/Chicken/Malaysia/5854/2004 | 1 | ISDN80767 | ISDN80771 | ISDN80770 |
| A/Chicken/Vietnam/1/2004 | 1 | ISDN40909 | ISDN48796 | ISDN111226 |
| A/Duck/Vietnam/NCVD1/2002 | – | ISDN38689 | ISDN38697 | ISDN39960 |
| A/Chicken/Vietnam/NCVD8/2003 | – | ISDN40326 | ISDN38706 | ISDN39967 |
| A/Chicken/Laos/7191/2004 | 1 | ISDN40922 | ISDN48817 | ISDN111227 |
| A/Chicken/Laos/7192/2004 | 1 | ISDN40923 | NA | NA |
| A/Goose/Cambodia/28/2004 | 1 | ISDN49121 | ISDN49130 | ISDN49144 |
| A/Chicken/ Cambodia/7/2004 | 1 | ISDN49117 | NA | NA |
| A/Duck/Hong Kong/821/2002 | 1´ | AY575874 | ISDN38794 | AY575898 |
| A/Hong Kong/213/2003 | 1´ | ISDN38262 | ISDN48789 | AY575894 |
| A/Chicken/Guangxi/12/2004 | 2 | ISDN48980 | ISDN48982 | ISDN48983 |
| A/Duck/Guangxi/13/2004 | 2 | ISDN48989 | ISDN48987 | ISDN48986 |
| A/Duck/Hunan/15/2004 | 2 | ISDN48957 | ISDN48958 | ISDN48968 |
| A/Chicken/Indonesia/7/2003 | 2 | ISDN111351 | ISDN111353 | ISDN111355 |
| A/Chicken/Indonesia/11/2003 | 2 | ISDN111352 | ISDN111354 | ISDN111356 |
| A/Chicken/Yamaguchi/7/2004 | 2 | ISDN49016 | ISDN49017 | ISDN49085 |
| A/Chicken/Korea/ES/2003 | 2 | ISDN40921 | ISDN38694 | ISDN45748 |
| A/Chicken/Hong Kong/YU324/03 | 2 | AY651358 | NA | NA |
| A/Chicken/Hong Kong/YU35703 | 2 | NA | ISDN38805 | ISDN38768 |
| A/Duck/China/E319-2/2003 | 2 | AY518362 | AY518363 | AY518361 |
| A/Chicken/Hubei/14/2004 | – | ISDN48972 | ISDN48973 | ISDN48975 |
| A/ Teal/Hong Kong/2978/2002 | – | AY651352 | ISDN38789 | AY651417 |
| A/Goose/Vietnam/113/2001 | – | ISDN38260 | ISDN48794 | ISDN117743 |
| A/Duck/Hong Kong/380.5/2001 | – | AY075033 | AY075034 | AY075035 |
| A/Duck meat/Anyang/AVL-1/2001 | – | AF468837 | AF468838 | AF468843 |
| A/Quail/Hong Kong/SF550/2000 | 3 | NA | AJ410561 | AJ410571 |
| A/Hong Kong/156/97 | 3 | AF460880 | AF036357 | AF036358 |
| A/Hong Kong/483/97 | 3 | AF460970 | AF102668 | AF255367 |
| A/Hong Kong/97/98 | 3 | AF102676 | AF102661 | AF255374 |
| A/Aquatic bird/Hong Kong/M603/98 | NA | NA | AF098551 | AF250486 |
| A/Chicken/Hong Kong/728/97 | 3 | AF046099 | NA | NA |
| A/Chicken/220/97 | 3 | AF046080 | NA | NA |
| A/Goose/Guangdong/1/96 | 3 | AF144305 | AF144304 | AF144306 |
| A/Hong Kong/1073/99 | NA | NA | NA | Submit |
*Virus names shown in boldface were used to prepare antiserum for use in antigenic characterization (Table 3). NA, not applicable. †ISDN numbers are found in the Los Alamos National Laboratory Influenza Sequence Database (available at http://apollo.lanl.gov); others are in Genbank (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Nucleotide).