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. 2012 Mar 26;287(21):17040–17049. doi: 10.1074/jbc.M112.340679

TABLE 1.

R values of fitted RDC data of substrate-bound MalE/MalF-P2

Correlation factors are calculated with respect to the full structure, the two individual domains for substrate-free and -bound MalE, and the intermediate state in the MalFGK2-E complex. A good correlation is observed for the full-length structure and the individual domains in the reference experiment (MalE/maltose). Fitted HN-N RDCs from the MalE/MalF-P2/maltose complex to known structures of MalE show a decreased correlation factor for the individual domains and the full-length structure. MalE/MalF-P2/maltose-derived RDCs show a better correlation with respect to the full-length structure of MalE with corrected relative orientations of the individual domains by Module (17). A similar dependence is observed for RDCs derived from MalE/MalF-P2 in the absence of maltose.

Complex Domain 1 Domain 2 Full-length
HN-N RDC MalE/maltose
    MalE with maltose (PDB: 1MPD) 0.97 0.98 0.89
    MalE without maltose (PDB: 1PEB) 0.94 0.90 0.63
HN-N RDC MalE/MalF-P2/maltose
    MalE with maltose (PDB: 1MPD) 0.65 0.76 0.61
    MalE without maltose (PDB: 1PEB) 0.61 0.68 0.56
    MalE (MalFGK2-E) (PDB: 2r6g) 0.68 0.56 0.47
    MalE/MalF-P2/maltose (Module) 0.65 0.76 0.71
HN-N RDC MalE/MalF-P2
    MalE without maltose (PDB: 1PEB) 0.62 0.78 0.63
    MalE/MalF-P2/maltose (Module) 0.62 0.78 0.68