Table 4. Oligonucleotide primers used in this study.
No. | Primer Sequence (5′ to 3′)* | Use |
424 | GCGAATTCCCGCTGGCTCGTTGGAACCG | Forward primer for creating pCNY506 |
425 | GCGTCGACTTAGTGATGGTGATGGTGATGCCGGCTGAGGCGCTTCGC | Reverse primer for creating pCNY506 |
225 | CTATCCGCATATGGCCCAACTAAAATTTAAC | Forward primer for creating pMS0125 |
226 | CGACTCGAGTTACCGGCTGAGGCGCTTCG | Reverse primer for creating pMS0125 |
207 | CGTGGGATCCCGTGCGATGTTGCGTCGTG | Forward primer for creating pKS2084 |
45 | GATCTCGAGTCACTCTTTCTCGGAGTAACTATAAC | Reverse primer for creating pKS2084 |
263 | ACCGTCAATGGTATGGTC | Forward primer for creating etk::kan in AP1417 |
264 | CGTTTTACCACTGTCTGG | Reverse primer for creating etk::kan in AP1417 |
475 | CGGGAAACGTTTGCAGCGGTGTACACATTACTTGAACGGTCTGCCCGCCAcaagagggtcattatatttcg | Forward primer for creating Δwzc::tet |
476 | AGGTAGGTCGGATAAGATGCGTCAGCATCGCATCCGACAGCGGATGTCGactcgacatcttggttaccg | Reverse primer for creating Δwzc::tet |
480 | GAAAGAGATCCCGGCTCCCTATCGTAAAAG | Forward primer for EtpD119A substitution in pCNY507 |
481 | CTTTTACGATAGGGAGCCGGGATCTCTTTC | Reverse primer for EtpD119A substitution in pCNY507 |
298 | GATCCCGGATCCCTTTCGTAAAAGTCAGG | Forward primer for EtpY121F substitution in pCNY508 |
299 | CCTGACTTTTACGAAAGGGATCCGGGATC | Reverse primer for EtpY121F substitution in pCNY508 |
460 | GAAAGAGATCCCGGCTCCCTTTCG TAAAAG | Forward primer for EtpD119A, Y121F substitutions in pCNY510 |
461 | CTTTTACGAAAGGGAGCCGGGATC TCTTTC | Reverse primer for EtpD119A, Y121F substitutions in pCNY510 |
437 | GAGATCCCGGATCCCGAGCGTAAAAGTCAGGACG | Forward primer for EtpY121E substitution in pCNY512 |
438 | CGTCCTGACTTTTACGCTCGGGATCCGGGATCTC | Reverse primer for EtpY121E substitution in pCNY512 |
493 | GAGATCCCGGATCCCGCGCGTAAAAGTCAGGACG | Forward primer for EtpY121A substitution in pCNY513 |
494 | CGTCCTGACTTTTACGCGCGGGATCCGGGATCTC | Reverse primer for EtpY121A substitution in pCNY513 |
58 | CAGAAAGAGATCCCGGCTCCCTATCGTAAAAGTCAGG | Forward primer for EtpD119A substitution in pAJ0046 |
59 | CCTGACTTTTACGATAGGGAGCCGGGATCTCTTTCTG | Reverse primer for EtpD119A substitution in pAJ0046 |
54 | GAGATCCCGGATCCCTTTCGTAAAAGTCAGGACG | Forward primer for EtpY121F substitution in pAJ0049 |
55 | CGTCCTGACTTTTACGAAAGGGATCCGGGATCTC | Reverse primer for EtpY121F substitution in pAJ0049 |
49 | CAGAAAGAGATCCCGGAGCCCTATCGTAAAAGTCAGG | Forward primer for EtpD119E substitution in pAJ2090, pAJ3242 |
48 | CCTGACTTTTACGATAGGGCTCCGGGATCTCTTTCTG | Reverse primer for EtpD119E substitution in pAJ2090, pAJ3242 |
Underlined sequences represent restriction enzyme sites, and lower case sequences are regions complementary to the template plasmid containing the antibiotic cassette.