Table 1. Classification and general features of Paenibacillus sp. JDR-2 according to the MIGS recommendations [11].
MIGS ID | Property | Term | Evidence code |
---|---|---|---|
Domain Bacteria | TAS [12] | ||
Phylum Firmicutes | TAS [13,14] | ||
Class Bacilli | TAS [15,16] | ||
Current classification | Order Bacillales | TAS [17,18] | |
Family Paenibacillaceae | TAS [16,19] | ||
Genus Paenibacillus | TAS [20-24] | ||
Paenibacillus sp. Strain JDR-2 | TAS [2] | ||
Gram stain | Positive | NAS | |
Cell shape | Rod-shaped | NAS | |
Sporulation | Spore-forming | NAS | |
Temperature range | Mesophile, | TAS [2] | |
Optimum temperature | 30°C | TAS [2] | |
Salinity | |||
MIGS-22 | Oxygen requirement | Aerobic | IDA |
Carbon source | Glucose, xylose, β-1,4-xylan, β-1,4-1,3-glucan, 4-O-methyl-glucuronoxylose | TAS [2] | |
Energy source | chemoorganotrophic | ||
MIGS-6 | Habitat | Sweet Gum stem wood | TAS [2] |
MIGS-15 | Biotic relationship | Free living | TAS [2] |
MIGS-14 | Pathogenicity | Non pathogenic | NAS |
Biosafety level | 1 | NAS | |
Isolation | Sweet Gum stem wood in soil | TAS [2] | |
MIGS-4 | Geographic location | Florida | TAS [2] |
MIGS-5 | Sample collection time | 2000 | TAS [2] |
MIGS-4.1 | Latitude | 29.4° | TAS |
MIGS-4.2 | Longitude | 82.3° | TAS |
MIGS-4.3 | Depth | 1 inch | TAS [2] |
MIGS-4.4 | Altitude | 180 feet above msl | NAS |
Evidence codes – IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable author statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). Evidence codes are from the Gene Ontology project [25].