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. 2012 Jun 6;7(6):e38087. doi: 10.1371/journal.pone.0038087

Table 2. Estimates of rdnsv in the 200 exomes in sets of genes as defined by ontology (GO) annotations.

Gene Ontology (GO) category genes nsSNVs sSNVs mean rdnsv sd rdnsv rdnsv0 rdnsv1
A)
GO:0007169:transmembrane_receptor_tyrosine_kinase_signaling 313 365 636 0.121 0.011 0.385 0.072
GO:0007167:enzyme_linked_receptor_protein_signaling_pathway 394 466 771 0.128 0.01 0.397 0.095
GO:0006935:chemotaxis 337 405 669 0.136 0.01 0.401 0.094
GO:0048812:neuron_projection_morphogenesis 326 445 703 0.139 0.011 0.396 0.11
GO:0007409:axonogenesis 303 420 664 0.141 0.012 0.397 0.11
GO:0031175:neuron_projection_development 368 510 795 0.143 0.011 0.4 0.119
GO:0048667:cell_morphogenesis_involved_in_neuron_differentiation 322 446 694 0.146 0.012 0.397 0.12
GO:0043005:neuron_projection 411 587 831 0.15 0.01 0.484 0.1
GO:0045202:synapse 326 477 633 0.151 0.013 0.544 0.089
GO:0048666:neuron_development 436 578 890 0.153 0.011 0.399 0.126
B)
GO:0005815:microtubule_organizing_center 277 542 484 0.344 0.025 0.5 0.399
GO:0005576:extracellular_region 1322 2281 1948 0.345 0.012 0.644 0.341
GO:0006952:defense_response 525 764 691 0.351 0.022 0.556 0.345
GO:0006955:immune_response 500 696 625 0.357 0.023 0.533 0.393
GO:0004871:signal_transducer_activity 1170 2350 1994 0.4 0.016 0.586 0.369
GO:0004872:receptor_activity 1233 2710 2218 0.406 0.015 0.615 0.368
GO:0038023:signaling_receptor_activity 913 2046 1583 0.456 0.019 0.624 0.43
GO:0004888:transmembrane_signaling_receptor_activity 844 1991 1489 0.466 0.02 0.654 0.437
GO:0004930:G-protein_coupled_receptor_activity 604 1469 890 0.603 0.029 0.741 0.573
GO:0004984:olfactory_receptor_activity 310 1024 430 0.896 0.048 1.011 0.993

The 10 GO-categories with the smallest (A) and the greatest (B) mean values of rdnsv are shown. The full list of all GO-categories with at least 1000 coding SNVs is given in Table S3. For each category the number of annotated genes, nonsynonymous and synonymous SNVs, the mean and standard deviation of individual rdnsv estimates across the 200 exomes, as well as the values of rdnsv0 and rdnsv1, are shown.