Table 2. Estimates of rdnsv in the 200 exomes in sets of genes as defined by ontology (GO) annotations.
Gene Ontology (GO) category | genes | nsSNVs | sSNVs | mean rdnsv | sd rdnsv | rdnsv0 | rdnsv1 |
A) | |||||||
GO:0007169:transmembrane_receptor_tyrosine_kinase_signaling | 313 | 365 | 636 | 0.121 | 0.011 | 0.385 | 0.072 |
GO:0007167:enzyme_linked_receptor_protein_signaling_pathway | 394 | 466 | 771 | 0.128 | 0.01 | 0.397 | 0.095 |
GO:0006935:chemotaxis | 337 | 405 | 669 | 0.136 | 0.01 | 0.401 | 0.094 |
GO:0048812:neuron_projection_morphogenesis | 326 | 445 | 703 | 0.139 | 0.011 | 0.396 | 0.11 |
GO:0007409:axonogenesis | 303 | 420 | 664 | 0.141 | 0.012 | 0.397 | 0.11 |
GO:0031175:neuron_projection_development | 368 | 510 | 795 | 0.143 | 0.011 | 0.4 | 0.119 |
GO:0048667:cell_morphogenesis_involved_in_neuron_differentiation | 322 | 446 | 694 | 0.146 | 0.012 | 0.397 | 0.12 |
GO:0043005:neuron_projection | 411 | 587 | 831 | 0.15 | 0.01 | 0.484 | 0.1 |
GO:0045202:synapse | 326 | 477 | 633 | 0.151 | 0.013 | 0.544 | 0.089 |
GO:0048666:neuron_development | 436 | 578 | 890 | 0.153 | 0.011 | 0.399 | 0.126 |
B) | |||||||
GO:0005815:microtubule_organizing_center | 277 | 542 | 484 | 0.344 | 0.025 | 0.5 | 0.399 |
GO:0005576:extracellular_region | 1322 | 2281 | 1948 | 0.345 | 0.012 | 0.644 | 0.341 |
GO:0006952:defense_response | 525 | 764 | 691 | 0.351 | 0.022 | 0.556 | 0.345 |
GO:0006955:immune_response | 500 | 696 | 625 | 0.357 | 0.023 | 0.533 | 0.393 |
GO:0004871:signal_transducer_activity | 1170 | 2350 | 1994 | 0.4 | 0.016 | 0.586 | 0.369 |
GO:0004872:receptor_activity | 1233 | 2710 | 2218 | 0.406 | 0.015 | 0.615 | 0.368 |
GO:0038023:signaling_receptor_activity | 913 | 2046 | 1583 | 0.456 | 0.019 | 0.624 | 0.43 |
GO:0004888:transmembrane_signaling_receptor_activity | 844 | 1991 | 1489 | 0.466 | 0.02 | 0.654 | 0.437 |
GO:0004930:G-protein_coupled_receptor_activity | 604 | 1469 | 890 | 0.603 | 0.029 | 0.741 | 0.573 |
GO:0004984:olfactory_receptor_activity | 310 | 1024 | 430 | 0.896 | 0.048 | 1.011 | 0.993 |
The 10 GO-categories with the smallest (A) and the greatest (B) mean values of rdnsv are shown. The full list of all GO-categories with at least 1000 coding SNVs is given in Table S3. For each category the number of annotated genes, nonsynonymous and synonymous SNVs, the mean and standard deviation of individual rdnsv estimates across the 200 exomes, as well as the values of rdnsv0 and rdnsv1, are shown.