Table 3.
Assembly performance on the human genome
k = 31 | k = 63 | k = 127 | k = 31 | k = 63 | k = 127 | |
---|---|---|---|---|---|---|
Error free data | 1% error rate | |||||
Memory peak (GB) | 14 | 16 | 19 | 30 | 49 | 51 |
> 100 bp (# k contigs ) | 3,195 | 1,984 | 714 | 2,727 | 1,554 | 1,359 |
Sum (G bp) | 2.37 | 2.79 | 2.83 | 2.29 | 2.72 | 2.88 |
Mean size (bp) | 743 | 1,406 | 3,961 | 839 | 1,751 | 2,121 |
N50 (bp) | 2,130 | 6,479 | 79,906 | 2,121 | 6,319 | 49,572 |
N90 (bp) | 244 | 631 | 10,441 | 304 | 872 | 1,021 |
Longest contig (bp) | 50,800 | 124,293 | 801,692 | 47164 | 124,292 | 537,017 |