Table 5.
Assembly performance on the human chromosome 14
| (k = 53) | ABySS | Velvet | SOAPdenovo | SparseAssembler |
|---|---|---|---|---|
| Time (hr) | 6 | 2.5 | 6. | 1.9 |
| Memory peak (GB) | 49 | 37 | 30 | 3 |
| > 100 bp (# contigs) | 85,181 | 129,046 | 84,719 | 55,024 |
| Sum (kbp) | 88,663 | 89,854 | 87,908 | 86,296 |
| Mean size (bp) | 1,041 | 696 | 1,038 | 1,568 |
| N50 (bp) | 3,568 | 1,499 | 3,117 | 3,890 |
| N95 (bp) | 179 | 184 | 197 | 202 |
| Corr NG50 (bp) | 3,475 | 1,487 | 3,065 | 3,760 |
| Corr NG95 (bp) | 175 | 178 | 192 | 198 |
| Coverage (%) | 98.54 | 98.86 | 98.42 | 97.56 |
| Longest contig (bp) | 61,018 | 16,043 | 49,584 | 60,797 |
| Misjoins | 24 | 62 | 47 | 61 |
This dataset was downloaded from http://gage.cbcb.umd.edu/data/index.html, genome size: 88,289,540.