Table 6.
Assembly performance on the NA12878 human genome
k = 31 | k = 41 | k = 51 | |
---|---|---|---|
Memory peak (GB) | 26 | 29 | 29 |
> 100 bp (# k contigs ) | 2,740 | 2,800 | 2,744 |
Sum (G bp) | 2.33 | 2.57 | 2.70 |
Mean size (bp) | 743 | 919 | 3,961 |
N50 (bp) | 2,054 | 2,647 | 2,915 |
N95 (bp) | 318 | 335 | 380 |
Longest contig (bp) | 36,460 | 38,864 | 50,441 |
Corr NG50 (bp)* | 1,502 | 2,213 | 2,610 |
Corr NG95 (bp)* | 0 | 0 | 114 |
Misjoins* | 21 | 19 | 17 |
* The corrected statistics are calculated by mapping back to human chromosome 14.