. 2012 Jun;80(6):2150–2157. doi: 10.1128/IAI.00141-12

Table 4.

Trichuris suis infection in pigs had profound impact on pathways related to carbohydrate and amino acid metabolisms in the porcine colon microbial community

Accession no.	KEGG pathway description (function class)^a	P value^b	q value^b	Ratio of ORF assignment^c
Accession no.	KEGG pathway description (function class)^a	P value^b	q value^b	Control	Infected
00520	Amino sugar and nucleotide sugar metabolism (C)	0.0004	0.0349	0.0148 ± 8.99E−05	0.0136 ± 1.59E-04
00500	Starch and sucrose metabolism (C)	0.0071	0.0624	0.0125 ± 2.88E−04	0.0109 ± 2.29E-04
00330	Arginine and proline metabolism (AA)	0.0185	0.0624	0.0119 ± 2.03E−04	0.0109 ± 2.15E−04
00051	Fructose and mannose metabolism (C)	0.0085	0.0624	0.0109 ± 2.20E−04	0.0099 ± 1.25E−04
00620	Pyruvate metabolism (C)	0.0466	0.0624	0.0098 ± 1.87E−04	0.0091 ± 1.63E−04
00270	Cysteine and methionine metabolism (AA)	0.0353	0.0624	0.0095 ± 2.66E−04	0.0086 ± 1.52E−04
00260	Glycine, serine, and threonine metabolism (AA)	0.0077	0.0624	0.0073 ± 1.05E−04	0.0066 ± 1.14E−04
00052	Galactose metabolism (C)	0.0238	0.0624	0.0072 ± 2.78E−04	0.0062 ± 1.97E−04
00350	Tyrosine metabolism (AA)	0.0110	0.0624	0.0066 ± 1.11E−04	0.0062 ± 5.95E−05
00300	Lysine biosynthesis (AA)	0.0350	0.0624	0.0061 ± 1.43E−04	0.0056 ± 1.09E−04
00360	Phenylalanine metabolism (AA)	0.0023	0.0491	0.0055 ± 4.72E−05	0.0051 ± 4.96E−05
00040	Pentose and glucuronate interconversions (C)	0.0123	0.0624	0.0051 ± 1.73E−04	0.0045 ± 4.24E−05
00030	Pentose phosphate pathway (C)	0.0356	0.0624	0.0046 ± 1.46E−04	0.0042 ± 2.45E−05
00053	Ascorbate and aldarate metabolism (C)	0.0098	0.0624	0.0011 ± 2.78E−05	0.0010 ± 2.19E−05

C, carbohydrate metabolism; AA, amino acid metabolism.

P and q values were calculated based on a modified t test.

The number denotes the ratio of ORF hits assigned to a given KEGG pathway divided by the total number of ORFs assigned to any pathways (mean ± SE; n = 3).