Table 3.
Strain | PMQR determinant(s) | Specimen | MIC (μg/ml)a |
MDR phenotypeb | QRDRc mutation(s) in: |
||||||
---|---|---|---|---|---|---|---|---|---|---|---|
NAL | OLA | CIP | NOR | OFX | LVX | gyrA | parC | ||||
U027 | aac(6′)-Ib-cr | Human urine | 512 | 8 | 0.25 | 1 | 0.5 | 0.25 | AMP, TET, SXT, CHL, GEN, CEF, AMK | S83L | WT |
T-U027 | aac(6′)-Ib-cr | 4 | 8 | 0.016 | 0.06 | 0.03 | 0.03 | AMP, TET, SXT, CHL, GEN | |||
U054 | aac(6′)-Ib-cr | Human urine | >1024 | 4 | 64 | 256 | 32 | 16 | AMP, TET, SXT, CHL, GEN, CEF, CAZ, ATM | S83L, D87N | S80I |
T-U054 | aac(6′)-Ib-cr | 4 | 8 | 0.016 | 0.06 | 0.03 | 0.03 | AMP | |||
U072 | aac(6′)-Ib-cr | Human urine | >1024 | 4 | 1 | 8 | 2 | 0.5 | AMP, TET, SXT, GEN, STR, CEF | S83L | S80I |
T-U072 | aac(6′)-Ib-cr | 8 | 4 | 0.016 | 0.06 | 0.03 | 0.03 | AMP, TET, SXT, STR, CEF | |||
U175 | aac(6′)-Ib-cr | Human urine | >1024 | 16 | 128 | 256 | 32 | 32 | AMP, TET, SXT, CHL, STR, CEF, CAZ, ATM, AMK | S83L, D87N | S80I |
T-U175 | aac(6′)-Ib-cr | 4 | 4 | 0.008 | 0.06 | 0.03 | 0.03 | AMP, TET, SXT, CHL, STR, CEF | |||
U220 | aac(6′)-Ib-cr | Human urine | >1024 | 8 | 256 | 256 | 32 | 16 | AMP, TET, SXT, GEN, STR, CEF, CAZ | S83L, D87N | S80I |
T-U220 | aac(6′)-Ib-cr | 4 | 8 | 0.016 | 0.06 | 0.03 | 0.03 | AMP, TET, SXT, STR, CEF | |||
U242 | aac(6′)-Ib-cr | Human urine | >1024 | 16 | 128 | 256 | 32 | 16 | AMP, TET, CEF | S83L, D87N | S80I |
T-U242 | aac(6′)-Ib-cr | 4 | 8 | 0.016 | 0.06 | 0.06 | 0.03 | AMP, TET | |||
U015 | qepA | Human urine | >1024 | 16 | 128 | >256 | 32 | 16 | AMP, TET, SXT, GEN, STR, CEF, CAZ, CTX, ATM, AMK | S83L, D87N | S80I |
T-U015 | qepA | 4 | 8 | 0.03 | 0.25 | 0.03 | 0.016 | AMP, TET, SXT, GEN, CEF, CTX, ATM, AMK | |||
U155 | qepA | Human urine | >1024 | 4 | 128 | 256 | 16 | 16 | AMP, TET, SXT, CHL, GEN, STR, CEF, CAZ, CTX, ATM | S83L, D87N | S80I |
T-U155 | qepA | 4 | 8 | 0.06 | 0.25 | 0.06 | 0.03 | AMP, GEN, CEF, CAZ, CTX, ATM | |||
U222 | qepA | Human urine | >1024 | 8 | >256 | >256 | 64 | 32 | AMP, TET, SXT, CHL, GEN, STR, PIP, CEF, CTX, AMK | S80L, D87N | S80I |
T-U222 | qepA | 4 | 8 | 0.016 | 0.125 | 0.03 | 0.016 | AMP, SXT, CHL, GEN, PIP, CEF, AMK | |||
C023 | qnrA1, oqxAB, aac(6′)-Ib-cr | Pig feces | >1024 | 128 | 8 | 32 | 16 | 8 | AMP, TET, SXT, GEN, STR | S83L | S80I |
T-C023 | qnrA1, aac(6′)-Ib-cr | 16 | 8 | 0.25 | 1 | 0.5 | 0.25 | AMP, GEN | |||
C040 | qnrA3, aac(6′)-Ib-cr | Pig feces | 32 | 2 | ≤0.125 | 0.5 | 0.25 | 0.25 | AMP, TET, SXT, GEN, STR | WT | WT |
T-C040 | qnrA3, aac(6′)-Ib-cr | 16 | 4 | 0.125 | 0.5 | 0.25 | 0.125 | AMP, TET, SXT | |||
C041 | qnrA3, aac(6′)-Ib-cr | Pig feces | 16 | 2 | ≤0.125 | 0.5 | 0.25 | 0.25 | AMP, TET, SXT, GEN, STR | WT | WT |
T-C041 | qnrA3, aac(6′)-Ib-cr | 16 | 4 | 0.25 | 0.5 | 0.25 | 0.125 | AMP, TET, SXT | |||
C042 | qnrA3, aac(6′)-Ib-cr | Pig feces | 16 | 2 | ≤0.125 | 0.5 | 0.5 | 0.25 | AMP, TET, SXT, GEN, STR | WT | WT |
T-C042 | qnrA3, aac(6′)-Ib-cr | 16 | 4 | 0.125 | 0.5 | 0.25 | 0.125 | AMP, TET, SXT | |||
C053 | qnrS1 | Pig feces | 8 | 8 | ≤0.125 | 0.25 | 0.5 | 0.25 | AMP, CHL | WT | WT |
T-C053 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP, CHL | |||
C058 | qnrS1 | Pig feces | 16 | 32 | ≤0.125 | 0.25 | 0.5 | 0.25 | AMP, TET, SXT | WT | WT |
T-C058 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP | |||
C111 | qnrS1 | Pig feces | 256 | 8 | 0.5 | 1 | 4 | 2 | AMP, TET, SXT, CHL, STR, PIP | S83L | WT |
T-C111 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, PIP | |||
C112 | qnrS1 | Pig feces | 256 | 8 | 0.5 | 1 | 8 | 2 | AMP, TET, SXT, CHL, STR, PIP | S83L | WT |
T-C112 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, PIP | |||
C113 | qnrS1 | Pig feces | 256 | 16 | 0.5 | 1 | 4 | 4 | AMP, TET, SXT, CHL, STR, PIP | S83L | WT |
T-C113 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, PIP | |||
C194 | qnrS1 | Pig feces | 16 | 32 | ≤0.125 | 0.25 | 0.5 | 0.25 | AMP, TET, GEN, STR, FOF | WT | A56T |
T-C194 | qnrS1 | 32 | 4 | 0.125 | 0.5 | 1 | 0.5 | AMP | |||
C261 | qnrS1 | Human feces | 32 | 4 | ≤0.125 | 0.25 | 0.5 | 0.25 | AMP, TET, SXT | WT | WT |
T-C261 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | TET, SXT | |||
C263 | qnrS1 | Dog feces | 16 | 8 | ≤0.125 | 0.5 | 0.5 | 0.5 | AMP, TET, SXT, GEN, STR, PIP | WT | WT |
T-C263 | qnrS1 | 16 | 4 | 0.125 | 0.5 | 1 | 0.5 | AMP | |||
C389 | qnrS1 | Chicken feces | 32 | 8 | ≤0.125 | 0.25 | 0.5 | 0.5 | AMP, TET, SXT, FOF | WT | WT |
T-C389 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | TET, SXT | |||
U033 | qnrS1 | Human urine | >1024 | 4 | 16 | 128 | 64 | 32 | AMP, TET, GEN, PIP | S83L, D87N | S80I |
T-U033 | qnrS1 | 16 | 8 | 0.5 | 1 | 1 | 0.5 | AMP, TET, GEN, PIP | |||
U116 | qnrS1 | Human urine | >1024 | 16 | 32 | 128 | 64 | 64 | AMP, TET, GEN, PIP | S83L, D87N | S80I |
T-U116 | qnrS1 | 32 | 8 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, GEN, PIP | |||
U145 | qnrS1 | Human urine | >1024 | 32 | 64 | 256 | 128 | 64 | AMP, TET, GEN, CEF | S83L, D87N | S80I |
T-U145 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET | |||
C193 | qnrS1, oqxAB | Pig feces | 64 | 64 | 0.25 | 0.5 | 2 | 1 | AMP, TET, SXT, GEN, STR, FOF | WT | A56T |
T-C193 | qnrS1 | 32 | 4 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, SXT | |||
C544 | qnrS1, oqxAB | Chicken feces | 64 | 128 | 0.25 | 1 | 2 | 0.5 | AMP, TET, SXT, CHL, GEN, STR, PIP, CEF, CTX, AMK, FOF | WT | WT |
T-C544 | qnrS1 | 32 | 4 | 0.125 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, STR | |||
C052 | qnrS1, oqxAB | Pig feces | 32 | 128 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, GEN, STR, PIP | WT | WT |
T-C052 | qnrS1 | 32 | 4 | 0.125 | 0.5 | 1 | 0.5 | AMP, CHL | |||
C054 | qnrS1, oqxAB | Pig feces | 32 | 64 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, GEN, STR | WT | WT |
T-C054 | qnrS1 | 32 | 8 | 0.125 | 0.5 | 1 | 0.5 | AMP, CHL | |||
C055 | qnrS1, oqxAB | Pig feces | 32 | 64 | ≤0.125 | 0.5 | 1 | 0.5 | AMP, TET, SXT, CHL, GEN, STR | WT | WT |
T-C055 | qnrS1 | 16 | 4 | 0.125 | 0.5 | 1 | 0.5 | AMP, CHL | |||
C594 | qnrS1, oqxAB | Dust | 32 | 128 | ≤0.125 | 0.5 | 1 | 0.5 | TET, SXT, CHL | WT | WT |
T-C594 | qnrS1, oqxAB | 64 | 32 | 0.25 | 1 | 1 | 0.5 | TET, SXT, CHL | |||
C709 | qnrS1, oqxAB | Dust | 32 | 128 | 0.25 | 0.5 | 1 | 0.5 | AMP, TET, AMK, SXT, CHL | WT | WT |
T-C709 | qnrS1, oqxAB | 64 | 32 | 0.25 | 1 | 2 | 0.5 | TET, SXT, CHL | |||
C056 | qnrS1, oqxAB, aac(6′)-Ib-cr | Pig feces | 128 | 128 | 1 | 2 | 2 | 0.5 | AMP, TET, SXT, CHL, GEN, STR, FOF | WT | WT |
T-C056 | oqxAB, aac(6′)-Ib-cr | 32 | 256 | 0.03 | 0.125 | 0.06 | 0.03 | AMP, TET, SXT, CHL, GEN | |||
C578 | qnrS1, aac(6′)-Ib-cr | Duck feces | 32 | 32 | 0.5 | 1 | 1 | 0.5 | AMP, TET, SXT | WT | WT |
T-C578 | qnrS1, aac(6′)-Ib-cr | 32 | 8 | 0.5 | 1 | 1 | 0.5 | AMP, TET, SXT | |||
C197 | qnrS2, aac(6′)-Ib-cr | Pig feces | 32 | 4 | 0.25 | 1 | 0.5 | 0.25 | AMP, TET, SXT, STR | WT | WT |
T-C197 | qnrS2, aac(6′)-Ib-cr | 32 | 4 | 0.5 | 1 | 1 | 0.5 | AMP, TET, SXT | |||
C265 | oqxAB, aac(6′)-Ib-cr | Chicken liver | >1024 | 128 | 8 | 32 | 8 | 4 | AMP, TET, SXT, CHL, GEN, CEF | S83L, D87N | S80R |
T-C265 | oqxAB, aac(6′)-Ib-cr | 32 | 64 | 0.03 | 0.125 | 0.06 | 0.03 | AMP, TET, SXT, CHL | |||
C324 | oqxAB, aac(6′)-Ib-cr | Chicken liver | >1024 | 256 | 32 | 64 | 16 | 8 | AMP, TET, SXT, CHL, GEN, CEF, CAZ | S83L, D87N | S80I |
T-C324 | oqxAB, aac(6′)-Ib-cr | 16 | 128 | 0.016 | 0.125 | 0.06 | 0.03 | AMP, TET, SXT, CHL | |||
C327 | oqxAB, aac(6′)-Ib-cr | Chicken liver | >1024 | 512 | 64 | 128 | 32 | 16 | AMP, TET, SXT, CHL, GEN, CEF, ATM, AMK, FOF, NIT | S83L, D87G | S80I |
T-C327 | oqxAB, aac(6′)-Ib-cr | 16 | 128 | 0.016 | 0.125 | 0.06 | 0.03 | AMP, TET, SXT, CHL | |||
C034 | oqxAB | Pig feces | >1024 | 128 | 8 | 32 | 16 | 8 | AMP, TET, SXT, PIP, GEN, STR | S83L, D87Y | S80I |
T-C034 | oqxAB | 32 | 64 | 0.016 | 0.125 | 0.06 | 0.03 | TET, GEN | |||
C671 | oqxAB | Chicken feces | >1024 | 128 | 16 | 32 | 16 | 8 | AMP, TET, SXT, CHL, STR, CEF | S83L, D87N | S80I |
T-C671 | oqxAB | 32 | 64 | 0.03 | 0.125 | 0.06 | 0.03 | AMP, TET, SXT, PIP, CEF | |||
U080 | oqxAB | Human urine | >1024 | 256 | 64 | 128 | 32 | 16 | AMP, TET, SXT, CHL, STR | S83L, D87N | S80I |
T-U080 | oqxAB | 32 | 64 | 0.03 | 0.125 | 0.06 | 0.03 | AMP, TET, SXT, CHL | |||
J53 Azr | 4 | 8 | 0.008 | 0.016 | 0.03 | 0.016 |
CIP, ciprofloxacin; LVX, levofloxacin; NAL, nalidixic acid; NOR, norfloxacin; OFX, ofloxacin; OLA, olaquindox.
Multidrug resistance (MDR) phenotype abbreviations are as follows: AMK, amikacin; AMP, ampicillin; ATM, aztreonam; CAZ, ceftazidime; CEF, cephalothin; CHL, chloramphenicol; CTX, cefotaxime; FOF, fosfomycin; GEN, gentamicin; NIT, nitrofurantoin; PIP, piperacillin; STR, streptomycin; SXT, trimethoprim-sulfamethoxazole; TET, tetracycline.
QRDR, quinolone resistance-determining region; S83L, mutation of the amino acid at codon 83 from S to L (etc.); WT, wild type (i.e., no mutation).
The “T-” prefix indicates a transconjugant.