Phylogenetic tree of MHC class II
B genes from various vertebrate species. The tree was
constructed by using p-distances for the amino acid
sequences (188 residues) of domains β1 and
β2. One allele from each locus was used as long as the
locus was identifiable. In chicken and Xenopus the class
II B loci have not been clearly identified, so that some
sequences used may represent different alleles from the same locus. The
human and mouse DM B genes, which are known to be
distantly related to other class II B genes (31) were
used as outgroups. The orthologous genes such as DQ,
DP, etc., in different species are bracketed. M-rat,
mole rat.