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. 2012 May 23;68(Pt 6):647–651. doi: 10.1107/S1744309112013267

Table 2. Quality statistics for SAD phasing using SeMet MmBag2(21103) and initial model building.

SAD phasing and model building
No. of Se atoms in protein 5
No. of protein copies in asymmetric unit 2
No. of placed Se atoms 8
Figure of merit 0.373
No. of residues built† 98
Bayesian map correlation coefficient‡ 0.72
Final No. of residues built and refined§ 138
Final R work/R free 0.319/0.363
Molecular-replacement statistics
No. of protein copies in asymmetric unit 8
Translation-function Z score (TFZ) 29.2
No. of C clashes (PAK) 0
Log-likelihood gain (LLG) 1469
†

Number of residues built by the PHENIX AutoBuild wizard out of 166 theoretically possible residues.

‡

Bayesian estimate of map quality determined by the PHENIX AutoSol wizard (Terwilliger et al., 2009 ▶).

§

Total number of residues, out of a theoretically possible 166 residues, built by a combined effort of automated building by PHENIX (Adams et al., 2010 ▶) followed by manual rebuilding in Coot (Emsley et al., 2010 ▶).

Scores for the best Phaser (McCoy et al., 2007 ▶) molecular-replacement solution using the model built from the 3.1 resolution SAD data set.