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. 2012 Jun 8;7(6):e38634. doi: 10.1371/journal.pone.0038634

Figure 4. Phylogenetic relationships of Tospovirus species inferred using S and M RNA-encoded proteins.

Figure 4

The trees were inferred with the maximum likelihood criterion implemented in the program RAxML. Node support was evaluated using non-parametric bootstrap resampling (500 replicates) and values are shown for key nodes. The BeNMV-SVNaV clade is shown in red. The shaded areas in purple, green and red represent the "Eurasian";, "American"; and PCFSV-PYSV clades, respectively. Tree inferred using N protein alignment: 23 taxa and 217 amino acids. Tree inferred using the NSm protein alignment: 18 taxa and 291 amino acids. Tree inferred using the NSs protein alignment: 21 taxa and 391 amino acids. Tree inferred using the Glycoprotein alignment: 18 taxa and 1007 amino acids. Tree inferred using the RdRp protein alignment: 14 taxa and 2811 amino acids. The complete viral names are found in the Table S2.