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Comparison of QC passes and failures across 1200 manually called SNPs
| Caller | TP | FP | TF | False-fail | Sensitivity/specificity |
|---|---|---|---|---|---|
| Illuminus | 574 | 260 | 134 | 232 | 0.71/0.34 |
| GenoSNP | 196 | 13 | 381 | 610 | 0.24/0.97 |
| GenCall | 519 | 33 | 361 | 287 | 0.64/0.92 |
| optiCall | 650 | 92 | 302 | 156 | 0.81/0.77 |
| Manual | 806 | 0 | 394 | 0 | 1.00/1.00 |
TP, manual pass and algorithm pass. FP, manual fail and algorithm pass. TF, manual fail and algorithm fail. False-fail = manual pass and algorithm fail.
