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. 2012 Jun 9;28(12):i163–i171. doi: 10.1093/bioinformatics/bts231

Table 7.

Annotation summary of all ASM regions in Table 4

Annotation Overlap Upstream Downstream
Protein coding gene 4 (4) exon 50 (24) 56 (25)
9 (7) intron
1 (1) 3′UTR
TE gene 19 (8) 11 (3) 4 (1)
Pseudogene 2 2 3
mi, t, other RNA 1 5 (2) 3
Transposon (only) 66 (39)

Numbers in parenthesis are on the opposite strands. Upstream and downstream are within 1kb.