Fig. 8.
Categories of inheritance between a pair of individuals sharing a haplotype for inherited and de novo (in individual B) deletions. To represent all possible inheritance patterns, we encode an individual's SNP as 0 or 1 for the homozygote, 2 for the heterozygote and 3 for missing data. Unlike inherited deletions, if individual A is a heterozygote, individual B may still harbor a de novo deletion.