. 2012 Jun;76(2):405–443. doi: 10.1128/MMBR.05013-11

Table 6.

Use of a masked-column version of Table S1 (available at http://semiglobe.lanl.gov/supplement.php) with appropriate sorting to evaluate down-Trp selection of C. trachomatis zero-Trp proteins

C. trachomatis locus	SEED ID	Gene^a	Product^b	Protein length (aa)	E. coli locus	SEED ID	Gene^a	Product	No. of Trp residues	Protein length (aa)
CT586	fig\|272561.1.peg.599	*uvrB*	UvrABC system protein B	668	b0779	fig\|83333.1.peg.765	uvrB	UvrABC system protein B	0	673
CT661	fig\|272561.1.peg.678	*gyrB2*	DNA gyrase subunit B	605
CT110	fig\|272561.1.peg.111	*mopA*	60-kDa chaperonin	544	b4143	fig\|83333.1.peg.4055	mopA	60-kDa chaperonin	0	548
CT571	fig\|272561.1.peg.584	gspE	General secretion protein E	501	b3326	fig\|83333.1.peg.3260	*gspE*	General secretion protein E	2	493
CT497	fig\|272561.1.peg.510	*dnaB*	Replicative DNA helicase	472	b4052	fig\|83333.1.peg.3962	grpA	Replicative DNA helicase	3	471
CT334	fig\|272561.1.peg.339	*dnaX2*	DNA Pol III, gamma subunit	466	b0470	fig\|83333.1.peg.466	dnaZX	DNA Pol III, gamma and tau subunits	6	643
CT491	fig\|272561.1.peg.503	rho	Transcription termination factor	464	b3783	fig\|83333.1.peg.3711	tsu	Transcription termination factor rho	1	419
CT669	fig\|272561.1.peg.686	yscN	Yop secretion ATPase	442	b1941	fig\|83333.1.peg.1921	*flaC*	Flagellum-specific ATP synthase	3	457
CT097	fig\|272561.1.peg.98	*nusA*	Transcription antitermination factor	434	b3169	fig\|83333.1.peg.3114	nusA	Transcription elongation protein	4	495
CT089	fig\|272561.1.peg.90	*lcrE*	Low calcium response E protein	421
CT705	fig\|272561.1.peg.722	*clpX*	ATP-dependent Clp protease ATP-binding subunit ClpX	419	b0438	fig\|83333.1.peg.435	lopC	ATP-dependent Clp protease ATP-binding subunit ClpX	0	424
CT075	fig\|272561.1.peg.76	*dnaN*	DNA polymerase III, beta chain	416	b3701	fig\|83333.1.peg.3637	dnaN	DNA polymerase III, beta chain	1	366
CT322	fig\|272561.1.peg.325	tufB	Elongation factor Tu	394	b3339	fig\|83333.1.peg.3273	tufA	Elongation factor Tu	1	394
CT341	fig\|272561.1.peg.346	dnaJ	Chaperone protein DnaJ	392	b0015	fig\|83333.1.peg.15	groP	Chaperone protein DnaJ	0	376
CT709	fig\|272561.1.peg.726	mreB	Rod shape-determining protein MreB	366	b3251	fig\|83333.1.peg.3193	rodY	Rod shape-determining protein MreB	0	367
CT243	fig\|272561.1.peg.246	*lpxD*	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	354	b0179	fig\|83333.1.peg.179	omsA	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	3	341
CT773	fig\|272561.1.peg.790	ldh	Leucine dehydrogenase	346
CT391	fig\|272561.1.peg.399	CT391	Hypothetical CT391 protein	335
CT070	fig\|272561.1.peg.71	CT070	Probable metal transport system membrane protein CT070	318
CT547	fig\|272561.1.peg.560	CT547	Hypothetical CT547 protein	318
CT093	fig\|272561.1.peg.94	*ribF*	Riboflavin kinase/flavin adenine dinucleotide synthase	301	b0025	fig\|83333.1.peg.25	ribF	Riboflavin biosynthesis protein	0	313

Location on the lagging strand is indicated in bold.

All of these C. trachomatis gene products contained zero Trp residues.