Table 2.
Fold change in transcript at hour post-infection1 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Normoglycaemic2 | STZ-diabetic | ||||||||||||
Liver | Spleen | Liver | Spleen | ||||||||||
Gene symbol | GenBank | 16hr | 24hr | 42hr | 16hr | 24hr | 42hr | 16hr | 24hr | 42hr | 16hr | 24hr | 42hr |
Toll-like receptor (TLR) and TLR-related | |||||||||||||
TLR2 | NM_011905 | 107 | 72 | 25 | 7 | 8 | 3 | – | 93 | 23 | – | – | – |
TLR3 | NM_126166 | 3 | 2 | 3 | – | – | – | – | 2 | 2 | – | – | – |
TLR4 | NM_021297 | – | – | 2 | – | – | 3 | – | – | 2 | – | – | – |
TLR5 | NM_016928 | −5 | −2 | −5 | – | – | – | – | – | – | – | – | – |
TLR6 | NM_011604 | – | – | – | – | 3 | – | – | – | – | – | – | – |
TLR7 | NM_133211 | – | – | – | 3 | 5 | 3 | – | – | – | – | – | – |
TLR13 | NM_205820 | – | – | 4 | – | 2 | 4 | – | – | 3 | – | – | – |
c-FOS | NM_010234 | 5 | 4 | 3 | 7 | 8 | 3 | – | 4 | 6 | – | – | – |
ICAM1 | NM_010493 | 28 | 45 | 18 | 5 | 3 | 3 | – | 51 | 12 | – | – | – |
TRAF6 | NM_009424 | 4 | 3 | – | – | – | – | – | 2 | – | – | – | – |
IRAK2 | NM_172161 | 3 | – | – | – | – | – | – | 4 | – | – | – | – |
IRAK3 | NM_028679 | 30 | 39 | 28 | 6 | 8 | – | – | 30 | 6 | – | – | – |
DUSP11 | NM_028099 | 2 | 2 | – | – | – | – | – | 2 | – | – | – | – |
DUSP16 | NM_130447 | 2 | 2 | 2 | 5 | 5 | 2 | – | 4 | – | – | – | – |
DUSP6 | NM_026268 | −3 | – | – | – | – | – | – | – | – | – | – | – |
DUSP8 | NM_008748 | 8 | 4 | 2 | – | – | – | – | 8 | 3 | – | – | – |
CD14 | NM_009841 | 106 | 259 | 151 | 10 | 20 | 5 | – | 171 | 48 | – | – | – |
MyD88 | NM_010851 | 8 | 4 | 3 | 4 | 3 | 3 | – | 5 | – | – | – | – |
CD40 | NM_170704 | 3 | – | – | – | 2 | – | – | – | – | – | – | – |
Tab2 | NM_138667 | – | – | 2 | – | – | – | – | – | – | – | – | – |
SOCS1 | NM_009896 | 12 | 9 | 6 | 10 | 8 | 5 | – | 8 | 4 | – | – | 3 |
SOCS2 | NM_007706 | – | 0 | 5 | – | 4 | – | – | – | – | – | – | – |
SOCS3 | NM_007707 | 11 | 5 | – | 13 | 11 | – | – | 11 | 6 | – | – | 3 |
TNFAIP3 (A20) | NM_009397 | 92 | 63 | 31 | – | – | – | – | 61 | 8 | – | – | – |
Cyokines and chemokines | |||||||||||||
MCP-1/CCL2 | NM_011333 | 28 | 69 | 39 | 39 | 51 | 11 | – | 90 | 13 | – | – | 10 |
MIP1a/CCL3 | NM_011337 | 3 | 5 | – | 39 | 48 | 12 | – | 4 | – | – | – | – |
MIP1b/CCL4 | NM_013652 | 20 | 30 | 27 | 39 | 35 | 10 | – | 12 | 8 | – | – | – |
RANTES/CCL5 | NM_013653 | – | 11 | 14 | – | 3 | – | – | – | – | – | – | – |
MCP-3/CCL7 | NM_013654 | 17 | 11 | 12 | 88 | 107 | 40 | – | 15 | 7 | – | – | 19 |
CCL9 | NM_011338 | – | 2 | 4 | – | – | 4 | – | – | 4 | – | – | – |
CCL12 | NM_011331 | 3 | 4 | 13 | 18 | 25 | 27 | – | 3 | 6 | – | – | 6 |
CCL6 | NM_009139 | – | – | 5 | – | – | – | – | – | – | – | – | – |
CCL24 | NM_019577 | – | – | 4 | – | – | – | – | – | 4 | – | – | – |
CCL11 | NM_011330 | 2 | 4 | – | 13 | 16 | 2 | – | – | – | – | – | – |
CCL17 | NM_011332 | – | – | – | 3 | 6 | – | – | – | – | – | – | – |
CXCL1/KC/GROA | NM_008176 | 27 | 18 | 16 | 103 | 113 | 26 | – | 13 | 5 | – | – | 27 |
CXCL10/IP10 | NM_021274 | 11 | 16 | – | 17 | 10 | – | – | 17 | 4 | – | – | 3 |
CXCL11 | NM_019494 | – | – | – | 3 | 3 | – | – | – | – | – | – | – |
CXCL12 | NM_013655 | −3 | −3 | – | – | – | – | – | −4 | −2 | – | – | – |
CXCL13 | NM_018866 | – | 2 | – | – | – | 4 | – | – | – | – | – | – |
CXCL16 | NM_023158 | – | 7 | 8 | – | 4 | 4 | – | 6 | – | – | – | – |
CXCL2/GROB | NM_009140 | 7 | 11 | – | 36 | 41 | 6 | – | 24 | – | – | – | 4 |
CXCL5/LIX | NM_009141 | 3 | 11 | – | 20 | 20 | 9 | – | 8 | – | – | – | – |
CXCL9/MIG | NM_008599 | 67 | 67 | 57 | 20 | 22 | – | – | 41 | 38 | – | – | 16 |
MIF | XM_147409 | – | – | – | – | 3 | 3 | – | – | – | – | – | 3 |
CSF1/M-CSF | NM_007778 | 2 | 3 | 5 | 2 | 2 | – | – | – | – | – | – | – |
CSF2 | NM_009969 | – | 2 | – | 7 | 5 | 2 | – | – | – | – | – | – |
CSF3/G-CSF | NM_009971 | 9 | 15 | – | 29 | 62 | – | – | 24 | – | – | – | – |
Immune response | |||||||||||||
MD2/Ly96 | NM_016923 | – | 2 | – | – | – | – | – | 3 | 3 | – | – | – |
Nfkb1 | NM_008689 | 4 | 4 | 3 | – | – | – | – | 7 | 4 | – | – | – |
Nfkb2 | NM_019408 | 3 | 3 | 3 | – | – | – | – | – | – | – | – | – |
Nfkbia/NFKBI | NM_010907 | 6 | 5 | – | – | 6 | – | – | 4 | – | – | – | – |
Nfkbib/IkB | NM_010908 | 3 | 3 | – | – | – | – | – | 3 | – | – | – | – |
Nfkbie/IkBE | NM_008690 | 3 | 13 | 13 | – | – | – | – | 13 | 6 | – | – | – |
Nfkbiz/INAP | NM_030612 | 24 | 5 | 7 | – | 8 | – | – | 4 | – | – | – | – |
IFNg | NM_008337 | 6 | 4 | – | 148 | 112 | 10 | – | 4 | – | – | – | – |
TNFa | NM_013693 | 3 | 6 | 2 | 9 | 5 | 3 | – | 11 | – | – | – | – |
TNFaip2 | NM_009396 | 8 | 17 | 6 | – | – | – | – | 31 | 7 | – | – | 2 |
TNFaip3 | NM_009397 | 92 | 63 | 31 | – | – | – | – | 61 | 8 | – | – | – |
NOS2 | NM_010927 | 3 | 11 | 3 | – | 3 | – | – | 27 | – | – | – | – |
IRF1 | NM_008390 | 14 | 19 | 9 | 4 | 4 | 4 | – | 27 | 12 | 3 | – | 4 |
IRF5 | NM_012057 | – | 3 | 2 | – | – | – | – | 4 | 4 | – | – | – |
IRF7 | NM_016850 | 5 | 6 | 5 | 7 | 10 | 7 | 3 | 5 | 8 | – | – | 6 |
IRF8 | NM_008320 | 8 | 6 | 6 | – | – | – | – | 8 | 13 | – | – | – |
Jak2 | NM_008413 | 2 | 2 | 3 | – | 2 | – | – | 4 | 3 | – | – | – |
Stat1 | NM_009283 | 11 | 6 | 9 | 4 | 5 | 5 | – | 6 | 10 | 2 | – | 3 |
Stat2 | NM_019963 | – | – | 2 | 4 | 5 | 4 | – | 3 | 3 | – | – | 2 |
Stat3 | NM_011486 | 6 | 3 | 3 | 3 | 3 | 3 | – | 2 | – | – | – | – |
Map3k1 | NM_011945 | 3 | 2 | 5 | – | – | – | – | – | 3 | – | – | – |
Map3k12 | NM_009582 | – | – | – | −2 | – | – | – | – | – | – | – | – |
Map3k14 | NM_016896 | 3 | 2 | – | – | – | – | – | 3 | 2 | – | – | – |
Map3k8 | NM_007746 | 4 | 3 | 2 | – | 6 | – | – | 3 | – | – | – | – |
Interleukin and interleukin-related | |||||||||||||
Il10 | NM_010548 | – | – | – | 2 | 7 | 4 | – | – | – | – | – | – |
Il11 | NM_008350 | – | 3 | – | 2 | – | – | – | 3 | – | – | – | – |
Il12rb1 | NM_008353 | – | – | – | 3 | 4 | – | – | – | – | – | – | – |
Il15 | NM_008357 | – | – | – | 5 | 4 | 2 | – | – | – | – | – | – |
Il15ra | NM_133836 | – | – | – | 4 | 7 | 4 | – | 3 | – | – | – | 2 |
Il18 | NM_008360 | – | −3 | – | – | – | – | – | – | – | – | – | – |
Il18bp | NM_010531 | – | 14 | 21 | 6 | 12 | 14 | – | 7 | 11 | – | – | 8 |
Il1a | NM_010554 | – | – | – | 8 | 9 | – | – | – | – | – | – | – |
Il1b | NM_008361 | 7 | 8 | 7 | 10 | 9 | – | – | 8 | 5 | – | – | – |
Il1r2 | NM_010555 | 2 | 3 | 3 | 10 | 17 | 10 | – | – | – | – | – | – |
Il1rap | NM_008364 | – | −6 | −5 | – | – | – | – | −4 | – | – | – | – |
Il23a | NM_031252 | – | 11 | – | 2 | – | – | – | 20 | – | – | – | – |
Il27 | NM_145636 | – | – | – | 4 | 4 | – | – | – | – | – | – | – |
Il33 | NM_133775 | 3 | 5 | – | 6 | 7 | 5 | – | 6 | – | – | – | – |
Il4i1 | NM_010215 | – | 15 | 15 | – | – | – | – | – | – | – | – | – |
Il6 | NM_031168 | – | – | – | 83 | 75 | 6 | – | – | – | – | – | – |
Il7 | NM_008371 | 4 | – | – | −3 | −3 | – | – | – | – | – | – | −2 |
Il8ra | NM_178241 | – | – | – | 2 | 2 | 5 | – | – | – | – | – | – |
Il8rb | NM_009909 | – | – | – | 3 | 5 | 5 | – | – | – | – | – | – |
Caspases cascades and cell death | |||||||||||||
caspase 1 | NM_009807 | 2 | 3 | 5 | – | – | – | – | 3 | 5 | – | – | – |
caspase 2 | NM_007610 | 2 | – | 3 | – | – | – | – | 3 | 2 | – | – | – |
caspase 4, caspase 11 | NM_007609 | 7 | 9 | 12 | 5 | 11 | 4 | – | 9 | 6 | – | – | – |
caspase 6 | NM_009811 | – | −4 | – | −2 | – | – | – | −3 | – | – | – | – |
caspase 7 | NM_007611 | – | 2 | – | – | 2 | 2 | – | – | – | – | – | 2 |
caspase 8 | NM_009812 | – | – | – | – | 2 | – | – | – | – | – | – | – |
PARP12 | NM_172893 | 6 | 5 | 4 | 8 | 8 | 4 | – | 5 | 5 | – | – | 4 |
PARP14 | NM_145481 | 13 | 10 | 8 | 6 | 6 | 4 | – | 9 | 8 | – | – | 3 |
Creb3 | NM_013497 | 3 | 3 | – | – | – | – | – | 4 | 2 | – | – | – |
Prkcb1 | NM_008855 | – | – | 2 | – | – | – | – | – | – | – | – | – |
Bid | NM_007544 | 4 | 8 | 4 | – | – | – | – | 10 | 5 | – | – | – |
Tnfrsf1a | NM_011609 | – | – | – | – | 2 | 3 | – | – | 3 | – | – | – |
CD95/FAS | NM_007987 | – | 4 | 4 | 4 | 5 | – | – | 3 | 3 | – | – | – |
Tnfrsf22 | NM_023680 | 3 | 6 | 12 | – | – | – | – | 10 | 10 | – | – | – |
Tnfsf10 | NM_009425 | 2 | 4 | 3 | 4 | 4 | 2 | – | 3 | 4 | – | – | 3 |
1200002N14Rik | NM_027878 | 10 | 22 | 23 | 4 | 5 | 5 | – | 9 | 6 | – | – | – |
Bcl2a1a | NM_009742 | 8 | 6 | 8 | – | – | – | – | 5 | 7 | – | – | – |
Bcl2a1b | NM_007534 | 11 | 9 | 12 | – | – | – | – | 8 | 10 | – | – | – |
Bcl2a1d | NM_007536 | 12 | 10 | 13 | – | – | – | – | 7 | 9 | – | – | – |
Birc2 | NM_007465 | 5 | 5 | 6 | – | – | – | – | 5 | 2 | – | – | – |
Birc3 | NM_007464 | 5 | 4 | – | – | – | – | – | 5 | – | – | – | – |
Cd28 | NM_007642 | – | – | 6 | – | – | – | – | – | – | – | – | – |
Cdkn1a | NM_007669 | 29 | 12 | 12 | 11 | 13 | 5 | – | – | – | – | – | 7 |
Ddit3 | NM_007837 | – | 5 | 6 | – | – | – | – | 5 | – | – | – | – |
Fcgr3 | NM_010188 | – | 2 | 5 | – | – | – | – | – | 3 | – | – | – |
Gadd45b | NM_008655 | 4 | 4 | 2 | 9 | 9 | 4 | – | – | – | – | – | – |
Litaf | NM_019980 | 6 | 3 | 3 | 3 | 4 | 3 | – | 5 | 3 | – | – | – |
Pnp | NM_013632 | 4 | 3 | 3 | 5 | 5 | 3 | – | 3 | 2 | – | – | 3 |
Prkr | NM_011163 | 8 | 4 | 3 | 7 | 6 | 4 | – | 5 | 3 | – | – | 2 |
Ripk2 | NM_138952 | 31 | 17 | 6 | 3 | – | – | – | 38 | 5 | – | – | – |
Scotin | NM_025858 | 3 | 5 | 5 | – | – | – | – | 4 | 5 | – | – | – |
Serpina3g | XM_354694 | 39 | 30 | 28 | 7 | 8 | 8 | – | 24 | 30 | – | – | 3 |
Sox9 | NM_011448 | 6 | 4 | 19 | – | – | – | – | 3 | – | – | – | – |
Tap1 | NM_013683 | 7 | 7 | 6 | 3 | 3 | – | – | 14 | 14 | 2 | – | 3 |
Tap2 | NM_011530 | 6 | 7 | 8 | – | – | – | – | 6 | 6 | – | – | 2 |
Inflammasome-related | |||||||||||||
NAIP2 | NM_010872 | – | 2 | 4 | – | – | – | – | 2 | 2 | – | – | – |
NLRP3 | NM_145827 | – | – | – | 2 | – | – | – | – | – | – | – | – |
CIIta (NLRA family) | NM_007575 | – | 4 | 4 | – | – | – | – | 4 | 7 | – | – | – |
NALP6/NLRP6 | NM_133946 | – | −4 | −4 | – | – | – | – | −2 | – | – | – | – |
NOD1 | NM_172729 | 3 | 2 | 3 | – | 3 | 4 | 2 | 3 | 3 | – | – | – |
NOD2 | NM_145857 | – | – | – | 3 | 3 | 2 | – | – | – | – | – | – |
P2X4 | NM_011026 | – | 2 | 2 | – | – | – | – | 3 | 3 | – | – | – |
P2ry13 | NM_028808 | 2 | 2 | 3 | – | – | – | – | – | 3 | – | – | – |
P2ry14 | NM_133200 | 2 | 3 | 4 | – | – | – | – | – | 4 | – | – | – |
P2ry2 | NM_008773 | 3 | 3 | – | 4 | 5 | 3 | – | 6 | 2 | – | – | – |
Panx1 | NM_019482 | – | 6 | 6 | – | – | – | – | 4 | 6 | – | – | – |
Ctsz | NM_022325 | – | – | – | – | – | 3 | – | – | 3 | – | – | – |
Ctss | NM_021281 | – | – | 4 | – | – | – | – | – | – | −2 | – | – |
Ctsc | NM_009982 | – | – | 5 | – | – | 3 | – | – | 5 | – | – | – |
Ctsf | NM_019861 | – | −3 | −3 | – | – | – | – | −2 | −2 | – | – | −2 |
Ctsd | NM_009983 | – | – | – | – | – | 3 | – | – | – | – | – | – |
Atg16l2 | XM_133655 | 6 | 6 | 5 | – | – | – | – | 7 | 3 | – | – | – |
Ifi205 | NM_172648 | 4 | 2 | 3 | 3 | 3 | – | – | – | 3 | – | – | – |
Ifi27 | NM_029803 | – | 2 | 5 | – | 2 | 3 | – | – | – | – | – | – |
Ifi30 | NM_023065 | – | – | 4 | – | – | – | – | – | 4 | – | – | – |
Ifi35 | NM_027320 | 3 | 3 | – | – | 4 | 2 | – | 3 | 3 | – | – | – |
Ifi44 | NM_133871 | 5 | 5 | 4 | 3 | – | 2 | – | 4 | 5 | – | – | – |
Ifi47 | NM_008330 | 28 | 18 | 15 | – | – | – | – | 31 | 20 | – | – | 3 |
Type 1 interferon (IFN) related | |||||||||||||
Oas1g | NM_011852 | 8 | 22 | 10 | – | 9 | 6 | 2 | 16 | 17 | – | – | 6 |
Oas2 | NM_145227 | 2 | 3 | 2 | 9 | 10 | 6 | – | 2 | 2 | – | – | – |
Oasl1 | NM_145209 | 13 | 22 | 12 | 19 | 18 | 6 | – | 15 | 15 | – | – | 7 |
Oasl2 | NM_011854 | 3 | 4 | 4 | 6 | 7 | 5 | – | 5 | 6 | – | – | 5 |
S100a9 | NM_009114 | 27 | 31 | 55 | – | – | – | – | 31 | 24 | – | – | – |
S100a8 | NM_013650 | 26 | 37 | 60 | – | – | – | – | 33 | 27 | – | – | – |
S100a6 | NM_011313 | – | – | 6 | – | – | – | 2 | – | 4 | – | – | – |
S100a11 | NM_016740 | – | 5 | 5 | – | – | 2 | – | 5 | 5 | – | – | – |
Acute-phase proteins | |||||||||||||
Fgl1 | NM_145594 | 3 | 3 | 3 | – | – | – | – | – | – | – | – | – |
Itih4 | NM_018746 | – | 2 | – | – | – | – | – | – | – | – | – | – |
Cp | NM_007752 | 5 | 4 | 6 | 2 | 3 | 4 | – | 5 | 6 | – | – | – |
Hp | NM_017370 | – | 5 | 5 | – | 7 | 5 | – | – | – | – | – | – |
Pla2g7 | NM_013737 | – | 2 | 3 | – | – | – | – | – | 2 | – | – | – |
Pla2g1b | NM_011107 | – | – | – | 25 | 29 | – | – | – | – | – | – | – |
Lbp | NM_008489 | 7 | 6 | 8 | – | – | – | – | 8 | 8 | – | – | – |
Saa1 | NM_009117 | 13 | 13 | 13 | – | – | – | – | – | – | – | – | – |
Saa2 | NM_011314 | 92 | 86 | 74 | – | – | – | – | – | – | – | – | – |
Saa3 | NM_011315 | 124 | 121 | 112 | 36 | 91 | 94 | – | – | – | – | – | 56 |
Saa4 | NM_011316 | 3 | 2 | – | – | – | – | – | – | – | – | – | – |
Fndc3b | NM_173182 | 6 | 3 | 5 | – | 3 | – | – | 2 | 3 | – | – | – |
Fndc3a | NM_207636 | – | – | – | 3 | 3 | – | – | – | – | – | – | – |
Fth1 | NM_010239 | – | – | – | – | 2 | 2 | – | – | – | – | – | – |
Proteasomal degradation and peptidoglysis | |||||||||||||
Mmp13 | NM_008607 | 3 | – | 6 | 49 | 26 | 10 | – | – | 6 | – | – | 6 |
Mmp14 | NM_008608 | – | – | 6 | 2 | 4 | 3 | – | – | 3 | – | – | – |
Mmp2 | NM_008610 | −2 | – | – | −4 | −3 | – | – | – | – | – | – | – |
Mmp23 | NM_011985 | – | – | – | −3 | −3 | – | – | – | – | – | – | – |
Mmp3 | NM_010809 | – | – | – | 8 | 41 | 35 | – | – | – | – | – | – |
Mmp7 | NM_010810 | – | 2 | 3 | – | – | – | – | – | – | – | – | – |
Mmp8 | NM_008611 | – | – | 3 | 3 | 10 | 13 | – | – | – | – | – | – |
Mmp9 | NM_013599 | – | 2 | 4 | – | 3 | 5 | – | – | – | – | – | – |
Ela2 | NM_007919 | – | – | – | 20 | 21 | – | – | – | – | – | – | – |
Ela1 | NM_033612 | −7 | −12 | – | 14 | 14 | – | – | −2 | −2 | – | – | – |
Ela3 | NM_026419 | – | – | – | 34 | 57 | – | – | – | – | – | – | – |
Ubd | NM_023137 | 137 | 192 | 203 | 28 | 33 | 30 | – | 262 | 218 | – | – | 14 |
Psma4 | NM_011966 | – | – | – | – | 2 | 2 | – | – | – | – | – | – |
Psma7 | NM_011969 | – | – | – | – | 3 | 2 | – | – | – | – | – | – |
Psmb10 | NM_013640 | 7 | 10 | 7 | 3 | 4 | 2 | – | 11 | 9 | – | – | 5 |
Psmb8 | NM_010724 | 4 | 9 | 8 | – | – | – | – | 7 | 8 | – | – | 2 |
Psmb9 | NM_013585 | 7 | 7 | 8 | – | – | – | – | 6 | 7 | – | – | – |
Psmd10 | NM_016883 | 4 | 5 | 5 | – | – | – | – | 5 | 3 | – | – | – |
Psmd8 | NM_026545 | – | 2 | 2 | – | – | – | – | – | – | – | – | – |
Psmd9 | NM_026000 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Psme1 | NM_011189 | – | 4 | 3 | – | 3 | 3 | – | 3 | 4 | – | – | 3 |
Prss1 | NM_053243 | – | – | – | 45 | 67 | – | – | – | – | – | – | – |
Prss2 | NM_009430 | – | – | – | 21 | 28 | – | – | – | – | – | – | – |
Prss23 | NM_029614 | – | – | – | – | 3 | 2 | – | – | – | – | – | – |
Ube1dc1 | NM_025692 | 2 | 2 | – | – | – | – | – | 3 | 3 | – | – | – |
Ube1l | NM_023738 | 6 | 11 | 8 | 3 | 3 | 2 | – | 9 | 8 | – | – | – |
Ube2l6 | NM_019949 | – | 3 | 3 | – | – | – | – | 3 | 3 | – | – | – |
Ube2n | NM_080560 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Ube3b | NM_054093 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Ube4b | NM_022022 | 2 | – | – | – | – | – | – | – | – | – | – | – |
Complement system | |||||||||||||
C1r | NM_023143 | – | – | – | – | 2 | – | – | – | – | – | – | – |
C1qa | NM_007572 | – | – | – | – | – | 3 | – | – | 3 | – | – | – |
C1qb | NM_009777 | – | – | – | – | – | 3 | – | – | 4 | – | – | – |
C1qc | NM_007574 | – | – | – | – | – | 3 | – | – | 4 | – | – | – |
C1qtnf1 | NM_019959 | – | – | – | – | – | 2 | – | – | 2 | – | – | – |
C2 | NM_013484 | – | 2 | 2 | – | 4 | 5 | – | – | 2 | – | – | – |
C3 | NM_009778 | – | – | – | – | 2 | 3 | – | – | – | – | – | – |
C4a | NM_011413 | – | – | – | – | – | 3 | – | – | – | – | – | – |
C4b | NM_009780 | – | – | – | – | – | 3 | – | – | – | – | – | – |
C4bp | NM_007576 | – | – | 2 | – | – | – | – | – | – | – | – | – |
C6 | NM_016704 | – | – | −4 | – | – | – | – | – | – | – | – | – |
C8a | NM_146148 | – | −3 | – | – | – | – | – | – | – | – | – | – |
C8b | NM_133882 | – | −3 | −6 | – | – | – | – | – | – | – | – | – |
C9 | NM_013485 | – | −3 | −4 | – | – | – | – | – | – | – | – | – |
C8g | XM_130127 | – | −2 | −4 | – | – | – | – | – | – | – | – | – |
Cfb | NM_008198 | – | – | – | 6 | 9 | 9 | – | – | – | – | – | – |
Cfhr1 | NM_015780 | – | −3 | −2 | – | – | – | – | −6 | – | – | – | – |
Masp1 | NM_008555 | – | −4 | −3 | – | – | – | – | −3 | – | – | – | – |
Masp2 | XM_358353 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Properdin | XM_135820 | – | – | 2 | – | – | – | – | – | – | – | – | – |
Cd55 | NM_010016 | – | – | 3 | – | – | – | – | – | – | – | – | – |
Cd93/c1qr | NM_010740 | – | 2 | 4 | – | 4 | 3 | – | 3 | 3 | – | – | – |
Sftpd | NM_009160 | 2 | 3 | 9 | – | – | 2 | – | 3 | 4 | – | – | – |
Fpr-rs2 | NM_008039 | 13 | 12 | 17 | 7 | 10 | 10 | – | 10 | 7 | – | – | – |
Fpr1 | NM_013521 | – | – | 2 | – | 6 | 5 | – | – | – | – | – | – |
Fibrinolysis and coagulation | |||||||||||||
Plau | NM_008873 | – | – | – | – | – | 5 | – | – | 6 | – | – | – |
Plaur | NM_011113 | 6 | 3 | – | 12 | 9 | 4 | – | 4 | – | – | – | – |
Plat | NM_008872 | – | – | – | 3 | 9 | 3 | – | – | – | – | – | – |
Klkb1 | NM_008455 | −3 | −28 | −5 | – | – | – | – | −15 | – | – | – | – |
Klk1 | NM_010639 | – | – | – | – | 27 | – | – | – | – | – | – | – |
Klk1b27 | NM_020268 | – | – | – | 9 | 22 | – | – | – | – | – | – | – |
Klk1b4 | NM_010915 | – | – | −3 | 10 | 21 | – | – | – | – | – | – | – |
Klk1b5 | NM_008456 | – | – | – | 14 | 26 | – | – | – | – | – | – | – |
Klk1b8 | NM_008457 | – | – | – | – | 3 | – | – | – | – | – | – | – |
Klk4 | NM_019928 | – | – | – | – | 3 | – | – | – | – | – | – | – |
F10 | NM_007972 | – | −2 | – | 3 | 6 | 4 | – | – | – | – | – | – |
F11 | NM_028066 | – | – | 2 | – | – | – | – | – | 2 | – | – | – |
F13b | NM_031164 | – | −7 | −4 | – | – | – | – | −3 | – | – | – | – |
F3 | NM_010171 | – | −2 | – | 6 | 5 | – | – | – | – | – | – | – |
F5 | NM_007976 | – | −3 | – | – | – | – | – | −3 | – | – | – | – |
F7 | NM_010172 | – | −2 | – | – | – | – | – | −3 | – | – | – | – |
F8 | NM_007977 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Oxidative and anti-oxidative | |||||||||||||
Gpx2 | NM_030677 | – | – | 6 | – | – | – | – | – | 3 | – | – | – |
Gpx3 | NM_008161 | – | 2 | 4 | – | – | 5 | – | 3 | – | – | – | – |
Gpx7 | NM_024198 | – | – | 2 | – | – | – | – | – | 2 | – | – | – |
Gsta4 | NM_010357 | – | −3 | −2 | – | – | – | – | – | – | – | – | – |
Gstm1 | NM_010358 | – | −3 | – | – | – | – | – | −2 | – | – | – | – |
Gstm2 | NM_008183 | – | – | – | – | – | 2 | – | – | – | – | – | – |
Gstm3 | NM_010359 | – | −2 | – | – | – | – | – | −2 | – | – | – | – |
Gstm4 | NM_026764 | −3 | −5 | −3 | – | – | – | – | −4 | – | – | – | – |
Gstm6 | NM_008184 | – | −4 | −2 | – | – | – | – | −3 | – | – | – | – |
Gstm7 | XM_359308 | – | −5 | – | – | – | – | – | −3 | – | – | – | – |
Gsto1 | NM_010362 | – | −3 | – | – | – | – | – | −2 | – | – | – | – |
Gstt1 | NM_008185 | – | −5 | −6 | – | – | – | – | – | −3 | – | – | – |
Gstt2 | NM_010361 | −2 | −3 | – | – | – | – | – | – | – | – | – | – |
Gstt3 | NM_133994 | – | −6 | −2 | – | – | – | – | – | – | – | – | – |
Gstz1 | NM_010363 | – | −3 | – | – | – | – | – | −2 | – | – | – | – |
Mgst3 | NM_025569 | – | −3 | −3 | – | −11 | – | – | – | – | – | – | – |
Gsr | NM_010344 | – | – | – | – | – | 2 | – | – | – | – | – | – |
Sod2 | NM_013671 | – | 2 | – | 5 | 6 | 4 | – | 2 | – | – | – | – |
Tgm2 | NM_009373 | 6 | 7 | 7 | 3 | 5 | 5 | – | 9 | 9 | – | – | 5 |
Noxo1 | NM_027988 | – | 13 | 6 | – | – | – | – | 6 | #N/A | – | – | – |
Vnn3 | NM_011979 | 13 | 25 | 10 | 2 | – | – | – | 27 | 11 | – | – | – |
Glycolysis/gluconeogenesis | |||||||||||||
Hk2 | NM_013820 | 7 | 4 | 6 | 5 | 6 | 4 | – | 6 | 4 | – | – | – |
Hk3 | NM_001033245 | 3 | 3 | 4 | – | 4 | 6 | – | 4 | 7 | – | – | – |
Khk | NM_008439 | −2 | – | −9 | – | −2 | – | – | – | – | – | – | – |
Pfkl | NM_008826 | – | – | – | – | 3 | – | – | – | – | – | – | – |
Pfkp | NM_019703 | – | – | – | – | 3 | 3 | – | – | 3 | – | – | – |
Pgk1 | NM_008828 | – | – | – | – | 4 | 3 | – | – | – | – | – | – |
Pfkm | NM_021514 | −4 | −4 | −3 | – | – | – | – | −3 | – | – | – | – |
Pgam1 | NM_023418 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Eno1 | NM_023119 | – | −2 | – | – | – | – | 2 | – | – | – | – | – |
Eno2 | NM_013509 | – | – | – | – | 3 | – | – | – | – | – | – | – |
Aldoa | NM_007438 | −4 | −3 | −3 | – | – | 3 | – | – | – | – | – | – |
Aldoc | NM_009657 | −2 | −4 | −5 | – | – | – | – | – | – | – | – | – |
Gapdh | NM_008084 | – | – | – | – | 2 | – | – | – | – | – | – | 2 |
Pkm2 | NM_011099 | – | 5 | 7 | – | 2 | 3 | – | 6 | 11 | – | – | – |
Ldha | NM_010699 | – | – | – | – | 2 | – | – | – | – | – | – | 2 |
Pdk4 | NM_013743 | – | – | – | – | 3 | – | – | – | – | – | – | – |
Pdhb | NM_024221 | – | −2 | −3 | – | – | – | – | – | – | – | – | – |
Pdk1 | NM_172665 | −3 | −4 | −3 | – | – | – | – | −4 | – | – | – | – |
Pdk3 | NM_145630 | – | – | 2 | – | – | – | – | 2 | 2 | – | – | – |
Pdk2 | NM_133667 | −2 | −3 | – | – | – | – | – | −3 | – | – | – | – |
Glycogen breakdown | |||||||||||||
Pygl | NM_133198 | – | −10 | −4 | – | – | 3 | – | – | – | – | – | – |
Pgm2 | NM_028132 | – | −2 | – | – | 4 | – | – | – | – | – | – | – |
Glycogen synthesis | |||||||||||||
Ugp2 | NM_139297 | −4 | −7 | −3 | – | – | – | – | −6 | – | – | – | – |
Ugt2b1 | NM_152811 | – | −9 | −41 | – | – | – | – | −5 | – | – | – | – |
Ugt2b34 | NM_153598 | – | −6 | −2 | – | – | – | – | −6 | – | – | – | – |
Ugt3a2 | NM_144845 | – | −6 | −10 | – | – | – | – | −3 | – | – | – | – |
Ugt1a7c | NM_201410 | – | – | – | −2 | – | – | – | −4 | – | – | – | – |
Tricarboxylic acid cycle | |||||||||||||
Aco1 | NM_007386 | – | −3 | – | – | – | – | – | −3 | – | – | – | – |
Idh1 | NM_010497 | – | – | −3 | – | – | – | – | −3 | – | – | – | – |
Idh3b | NM_130884 | – | −2 | −2 | – | – | – | – | – | – | – | – | – |
Idh3a | NM_029573 | −2 | – | – | – | – | – | – | – | – | – | – | – |
Sdhb | NM_023374 | – | −3 | −4 | – | – | – | – | – | −2 | – | – | – |
Sdhc | NM_025321 | – | −2 | – | – | – | – | – | −2 | – | – | – | – |
Sdhd | NM_025848 | – | −3 | – | – | – | – | – | −3 | – | – | – | – |
Mdh1 | NM_008618 | – | −4 | −3 | – | – | – | – | −3 | – | – | – | – |
Fatty acid metabolism | |||||||||||||
Ehhadh | NM_023737 | – | −6 | – | – | – | – | – | – | – | – | – | – |
Hadh | NM_008212 | – | −3 | −2 | – | – | – | – | −2 | – | – | – | – |
Acat1 | NM_144784 | – | −6 | −7 | – | – | – | – | −3 | −4 | – | – | – |
Acat2 | NM_009338 | – | −2 | −3 | – | – | – | – | – | – | – | – | – |
Acat3 | NM_153151 | – | – | 2 | – | – | – | – | – | – | – | – | – |
Valine, leucine and Isoleucine degradation | |||||||||||||
Hmgcs1 | NM_145942 | – | – | −2 | – | – | – | – | – | – | – | – | – |
Hmgcs2 | NM_008256 | – | −7 | – | −3 | – | – | – | – | – | – | – | – |
Aldh1a1 | NM_013467 | – | −7 | −2 | – | – | – | – | −4 | – | – | – | – |
Aldh1a7 | NM_011921 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Aldh1b1 | NM_028270 | −3 | −9 | – | – | – | – | – | −5 | – | – | – | – |
Aldh1l1 | NM_027406 | – | −3 | −4 | – | – | – | – | – | – | – | – | – |
Aldh3b1 | NM_026316 | – | 3 | 5 | – | – | – | – | – | 3 | – | – | – |
Aldh4a1 | NM_175438 | −2 | −14 | −6 | – | – | – | – | −5 | – | – | – | – |
Aldh5a1 | NM_172532 | – | −2 | – | – | – | – | – | – | – | – | – | – |
Aldh6a1 | NM_134042 | – | −3 | – | – | – | – | – | −2 | – | – | – | – |
Aldh8a1 | NM_178713 | −5 | −8 | – | – | – | – | – | −3 | – | – | – | – |
Cytochrome b | |||||||||||||
Cyp17a1 | NM_007809 | – | −3 | – | – | – | – | – | – | – | – | – | – |
Cyp1b1 | NM_009994 | – | – | – | – | 5 | 5 | – | 3 | – | – | – | – |
Cyp1a2 | NM_009993 | −3 | −11 | −88 | – | – | – | – | −7 | −14 | – | – | – |
Cyp27a1 | NM_024264 | – | −2 | −5 | −2 | −2 | – | – | – | – | – | – | – |
Cyp2a12 | NM_133657 | – | −3 | – | – | – | – | – | – | – | – | – | – |
Cyp2a4 | NM_009997 | −4 | −5 | −3 | – | – | – | – | −6 | – | – | – | – |
Cyp2a5 | NM_007812 | −8 | – | −10 | – | – | – | – | −8 | −4 | – | – | – |
Cyp2b10 | NM_009999 | – | – | 2 | – | – | – | – | – | – | – | – | – |
Cyp2c29 | NM_007815 | – | −6 | −49 | – | – | – | – | −3 | – | – | – | – |
Cyp2c37 | NM_010001 | – | −8 | −112 | – | – | – | – | −4 | – | – | – | – |
Cyp2c39 | NM_010003 | – | −9 | – | – | – | – | – | – | – | – | – | – |
Cyp2c50 | NM_134144 | – | −11 | −22 | – | – | – | – | −3 | −3 | – | – | – |
Cyp2c54 | NM_206537 | – | −4 | −5 | – | – | – | – | −5 | −10 | – | – | – |
Cyp2c55 | NM_028089 | – | – | −3 | – | – | – | – | – | – | – | – | – |
Cyp2d10 | NM_010005 | – | −3 | −3 | – | – | – | – | – | – | – | – | – |
Cyp2d13 | NM_133695 | −3 | −5 | −6 | – | – | – | – | −3 | – | – | – | – |
Cyp2d22 | NM_019823 | – | −4 | −3 | – | – | 2 | – | −2 | −3 | – | – | – |
Cyp2d26 | NM_029562 | – | −4 | −2 | – | – | – | – | −3 | – | – | – | – |
Cyp2d9 | NM_010006 | – | −3 | −3 | – | – | – | – | – | – | – | – | – |
Cyp2e1 | NM_021282 | – | −3 | −12 | – | – | – | – | −2 | – | – | – | – |
Cyp2f2 | NM_007817 | – | −6 | −11 | – | – | – | – | – | – | – | – | – |
Cyp2g1 | NM_013809 | −3 | −3 | −3 | – | – | – | – | −3 | – | – | – | – |
Cyp2j9 | NM_028979 | – | −3 | – | – | – | – | – | −3 | – | – | – | – |
Cyp3a11 | NM_007818 | – | −6 | −5 | – | – | – | – | −3 | – | – | – | – |
Cyp3a25 | NM_019792 | – | −7 | −3 | – | – | – | – | −3 | – | – | – | – |
Cyp4a10 | NM_010011 | – | −7 | – | – | – | – | – | – | – | – | – | – |
Cyp4a12 | NM_177406 | – | −2 | −2 | – | – | – | – | – | – | – | – | – |
Cyp4a12b | NM_172306 | – | −4 | −4 | – | – | – | – | – | – | – | – | – |
Cyp4b1 | NM_007823 | −2 | – | – | – | −3 | – | – | – | – | – | – | – |
Cyp4f14 | NM_022434 | −2 | −12 | −50 | – | – | – | – | −4 | – | – | – | – |
Cyp4f15 | NM_134127 | −5 | −14 | −4 | – | – | – | – | −12 | −4 | – | – | – |
Cyp4v3 | NM_133969 | −3 | −6 | −3 | – | – | 2 | – | −3 | −3 | – | – | – |
Cyp51 | NM_020010 | – | – | −3 | – | – | – | – | – | – | – | – | – |
Cyp7a1 | NM_007824 | −176 | −228 | −211 | – | – | – | – | −98 | −39 | – | – | – |
Cyp7b1 | NM_007825 | – | – | – | – | 3 | 4 | – | – | – | – | – | – |
Cyp8b1 | NM_010012 | – | −154 | −137 | – | – | – | – | −68 | – | – | – | – |
Miscellaneous | |||||||||||||
Faah | NM_010173 | −3 | −36 | −5 | – | – | – | – | −10 | – | – | – | – |
Car1 | NM_009799 | −2 | −4 | −5 | – | – | −6 | −2 | −6 | −7 | – | – | – |
Car13 | NM_024495 | 4 | 7 | 8 | 5 | 8 | 4 | – | 4 | 3 | – | – | – |
Car14 | NM_011797 | −4 | −13 | −10 | – | – | – | – | −3 | −4 | – | – | – |
Car2 | NM_009801 | – | – | – | – | – | −11 | – | – | – | – | – | – |
Car3 | NM_007606 | – | −6 | −263 | – | – | – | – | −4 | −34 | – | – | – |
Car4 | NM_007607 | 2 | 12 | – | – | 5 | 2 | – | – | – | – | – | – |
Car5a | NM_007608 | −7 | −26 | −11 | – | – | – | – | −19 | – | – | – | – |
Akr1b3 | NM_009658 | – | – | 3 | – | – | – | – | – | – | – | – | – |
Akr1b7 | NM_009731 | – | – | 4 | – | – | – | – | – | – | – | – | – |
Akr1c14 | NM_134072 | −8 | −23 | −12 | – | – | – | – | −26 | – | – | – | – |
Akr1c19 | NM_001013785 | – | −5 | −8 | – | – | – | – | −7 | −6 | – | – | – |
Akr1c6 | NM_030611 | – | −17 | −24 | – | – | – | – | −5 | – | – | – | – |
Akr1e1 | NM_018859 | – | −3 | – | – | – | – | – | −2 | – | – | – | – |
Akr7a5 | NM_025337 | – | −4 | −2 | – | – | – | – | – | – | – | – | – |
Ddc | NM_016672 | −14 | −31 | −4 | – | – | – | – | −13 | – | – | – | – |
Apoa2 | NM_013474 | −3 | −6 | – | – | – | – | – | – | – | – | – | – |
Apoa5 | NM_080434 | – | −24 | – | – | – | – | – | −11 | – | – | – | – |
Aqp1 | NM_007472 | −3 | – | – | – | −4 | −12 | – | – | – | – | – | – |
Aqp11 | NM_175105 | −5 | −5 | −2 | – | – | – | – | −3 | −2 | – | – | – |
Aqp4 | NM_009700 | – | −3 | −2 | – | – | – | – | −2 | – | – | – | – |
Aqp8 | NM_007474 | −6 | – | −6 | – | – | – | – | – | – | – | – | – |
Aqp9 | NM_022026 | −5 | −24 | −4 | – | – | −4 | – | −8 | – | – | – | – |
Arg1 | NM_007482 | – | −5 | – | – | 3 | 5 | – | −4 | – | – | – | – |
Arg2 | NM_009705 | – | 19 | 11 | 4 | 6 | 3 | – | 12 | – | – | – | – |
Modulated transcripts are classified according to functional groups. Only genes with a more than twofold change in B. pseudomallei-infected liver or spleen versus uninfected control tissue are shown; ‘–’, no significant change in gene expression.
Data adopted from our recent work on genome-wide expression profiling of a murine acute melioidosis model.18